Analysis of interatomic Contacts of Structural Units in PDB entry:
7AAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AAV entry

There are 17 chains in PDB entry 7AAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
r	LYS 63	MET 957
Q	LYS 3	ARG 140
L	GLY 8	ARG 110
R	ARG 186	LYS 229
K	ASN 271	HIS 393
G	LYS 181	HIS 500
Z	C 50	A 78
8	TYR 114	THR 131
I	MET 1	GLN 176
A	PRO 63	SER 1755
P	TRP 15	MET 220
v	ASP 129	ARG 438
N	GLY 79	GLU 134
2	G 19	C 28
5	U 7	G 75
6	G 1	G 75
q	MET 1	GLN 73

There are127 helices in PDB entry 7AAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	r	118	125	Right-handed alpha
Helix 2	AA2	r	142	154	Right-handed alpha
Helix 3	AA3	r	171	178	Right-handed alpha
Helix 4	AA4	r	208	210	Right-handed 310
Helix 5	AA5	r	211	220	Right-handed alpha
Helix 6	AA6	r	236	249	Right-handed alpha
Helix 7	AA7	r	261	266	Right-handed alpha
Helix 8	AA8	r	270	289	Right-handed alpha
Helix 9	AA9	r	319	330	Right-handed alpha
Helix 10	AB1	r	368	373	Right-handed alpha
Helix 11	AB2	r	373	386	Right-handed alpha
Helix 12	AB3	r	391	399	Right-handed alpha
Helix 13	AB4	r	404	409	Right-handed alpha
Helix 14	AB5	r	411	424	Right-handed alpha
Helix 15	AB6	r	427	430	Right-handed 310
Helix 16	AB7	r	431	436	Right-handed alpha
Helix 17	AB8	r	445	453	Right-handed alpha
Helix 18	AB9	r	460	465	Right-handed alpha
Helix 19	AC1	r	599	614	Right-handed alpha
Helix 20	AC2	r	633	647	Right-handed alpha
Helix 21	AC3	r	693	702	Right-handed alpha
Helix 22	AC4	r	710	721	Right-handed alpha
Helix 23	AC5	r	725	731	Right-handed alpha
Helix 24	AC6	r	736	740	Right-handed 310
Helix 25	AC7	r	764	774	Right-handed alpha
Helix 26	AC8	r	807	822	Right-handed alpha
Helix 27	AC9	r	843	853	Right-handed alpha
Helix 28	AD1	r	882	891	Right-handed alpha
Helix 29	AD2	r	928	937	Right-handed alpha
Helix 30	AD3	r	938	940	Right-handed 310
Helix 31	AD4	r	949	953	Right-handed 310
Helix 32	AD5	Q	18	34	Right-handed alpha
Helix 33	AD6	Q	46	65	Right-handed alpha
Helix 34	AD7	Q	71	82	Right-handed alpha
Helix 35	AD8	Q	85	94	Right-handed alpha
Helix 36	AD9	L	12	25	Right-handed alpha
Helix 37	AE1	L	30	39	Right-handed alpha
Helix 38	AE2	L	42	50	Right-handed alpha
Helix 39	AE3	L	64	78	Right-handed alpha
Helix 40	AE4	L	81	90	Right-handed alpha
Helix 41	AE5	L	95	108	Right-handed alpha
Helix 42	AE6	R	217	224	Right-handed alpha
Helix 43	AE7	K	272	314	Right-handed alpha
Helix 44	AE8	8	121	131	Right-handed alpha
Helix 45	AE9	I	22	30	Right-handed alpha
Helix 46	AF1	I	32	37	Right-handed alpha
Helix 47	AF2	I	43	54	Right-handed alpha
Helix 48	AF3	I	68	81	Right-handed alpha
Helix 49	AF4	I	83	93	Right-handed alpha
Helix 50	AF5	I	96	111	Right-handed alpha
Helix 51	AF6	I	112	121	Right-handed alpha
Helix 52	AF7	I	122	126	Right-handed 310
Helix 53	AF8	I	144	152	Right-handed alpha
Helix 54	AF9	I	167	175	Right-handed alpha
Helix 55	AG1	A	65	70	Right-handed alpha
Helix 56	AG2	A	84	91	Right-handed alpha
Helix 57	AG3	A	94	105	Right-handed alpha
Helix 58	AG4	A	136	158	Right-handed alpha
Helix 59	AG5	A	210	215	Right-handed alpha
Helix 60	AG6	A	231	243	Right-handed alpha
Helix 61	AG7	A	261	269	Right-handed alpha
Helix 62	AG8	A	309	316	Right-handed alpha
Helix 63	AG9	A	316	321	Right-handed alpha
Helix 64	AH1	A	371	377	Right-handed alpha
Helix 65	AH2	A	378	380	Right-handed 310
Helix 66	AH3	A	398	406	Right-handed alpha
Helix 67	AH4	A	408	412	Right-handed 310
Helix 68	AH5	A	440	460	Right-handed alpha
Helix 69	AH6	A	473	478	Right-handed alpha
Helix 70	AH7	A	489	512	Right-handed alpha
Helix 71	AH8	A	534	539	Right-handed alpha
Helix 72	AH9	A	543	567	Right-handed alpha
Helix 73	AI1	A	572	588	Right-handed alpha
Helix 74	AI2	A	597	617	Right-handed alpha
Helix 75	AI3	A	632	652	Right-handed alpha
Helix 76	AI4	A	678	694	Right-handed alpha
Helix 77	AI5	A	706	722	Right-handed alpha
Helix 78	AI6	A	732	760	Right-handed alpha
Helix 79	AI7	A	770	797	Right-handed alpha
Helix 80	AI8	A	802	821	Right-handed alpha
Helix 81	AI9	A	834	851	Right-handed alpha
Helix 82	AJ1	A	857	872	Right-handed alpha
Helix 83	AJ2	A	873	887	Right-handed alpha
Helix 84	AJ3	A	912	934	Right-handed alpha
Helix 85	AJ4	A	948	961	Right-handed alpha
Helix 86	AJ5	A	989	1001	Right-handed alpha
Helix 87	AJ6	A	1002	1013	Right-handed alpha
Helix 88	AJ7	A	1036	1053	Right-handed alpha
Helix 89	AJ8	A	1054	1063	Right-handed alpha
Helix 90	AJ9	A	1076	1082	Right-handed alpha
Helix 91	AK1	A	1102	1117	Right-handed alpha
Helix 92	AK2	A	1122	1126	Right-handed 310
Helix 93	AK3	A	1143	1161	Right-handed alpha
Helix 94	AK4	A	1233	1250	Right-handed alpha
Helix 95	AK5	A	1255	1274	Right-handed alpha
Helix 96	AK6	A	1281	1304	Right-handed alpha
Helix 97	AK7	A	1313	1318	Right-handed alpha
Helix 98	AK8	A	1336	1339	Right-handed 310
Helix 99	AK9	A	1374	1399	Right-handed alpha
Helix 100	AL1	A	1418	1422	Right-handed 310
Helix 101	AL2	A	1426	1431	Right-handed alpha
Helix 102	AL3	A	1435	1447	Right-handed alpha
Helix 103	AL4	A	1467	1479	Right-handed alpha
Helix 104	AL5	A	1479	1487	Right-handed alpha
Helix 105	AL6	A	1489	1494	Right-handed alpha
Helix 106	AL7	A	1529	1538	Right-handed alpha
Helix 107	AL8	A	1538	1543	Right-handed alpha
Helix 108	AL9	A	1566	1577	Right-handed alpha
Helix 109	AM1	A	1581	1600	Right-handed alpha
Helix 110	AM2	A	1670	1674	Right-handed 310
Helix 111	AM3	A	1675	1687	Right-handed alpha
Helix 112	AM4	A	1722	1735	Right-handed alpha
Helix 113	AM5	A	1739	1752	Right-handed alpha
Helix 114	AM6	P	93	98	Right-handed alpha
Helix 115	AM7	P	146	151	Right-handed alpha
Helix 116	AM8	P	165	170	Right-handed alpha
Helix 117	AM9	P	175	179	Right-handed 310
Helix 118	AN1	P	191	195	Right-handed 310
Helix 119	AN2	P	197	203	Right-handed alpha
Helix 120	AN3	P	207	216	Right-handed alpha
Helix 121	AN4	v	136	162	Right-handed alpha
Helix 122	AN5	v	240	245	Right-handed alpha
Helix 123	AN6	v	281	326	Right-handed alpha
Helix 124	AN7	N	91	100	Right-handed alpha
Helix 125	AN8	N	120	134	Right-handed alpha
Helix 126	AN9	q	23	36	Right-handed alpha
Helix 127	AO1	q	38	40	Right-handed 310

There are 33 sheets in PDB entry 7AAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	184	187	first strand
Strand 2	r	201	204	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	226	230	first strand
Strand 2	r	254	258	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	310	311	first strand
Strand 2	r	316	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	476	477	first strand
Strand 2	r	564	566	anti-parallel
Strand 3	r	508	510	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	482	483	first strand
Strand 2	r	490	491	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	494	495	first strand
Strand 2	r	549	551	anti-parallel
Strand 3	r	531	532	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	627	631	first strand
Strand 2	r	588	594	anti-parallel
Strand 3	r	653	655	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	627	631	first strand
Strand 2	r	588	594	anti-parallel
Strand 3	r	659	660	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	783	784	first strand
Strand 2	r	663	666	parallel
Strand 3	r	825	826	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	686	690	first strand
Strand 2	r	788	793	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	857	862	first strand
Strand 2	r	869	876	anti-parallel
Strand 3	r	828	838	anti-parallel
Strand 4	r	899	906	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	200	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	477	481	anti-parallel
Strand 4	G	465	469	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	210	212	first strand
Strand 2	G	218	221	anti-parallel
Strand 3	G	227	232	anti-parallel
Strand 4	G	238	243	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	249	254	first strand
Strand 2	G	261	265	anti-parallel
Strand 3	G	272	274	anti-parallel
Strand 4	G	279	280	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	291	296	first strand
Strand 2	G	302	307	anti-parallel
Strand 3	G	313	316	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	337	first strand
Strand 2	G	344	349	anti-parallel
Strand 3	G	355	358	anti-parallel
Strand 4	G	364	367	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	416	421	first strand
Strand 2	G	426	431	anti-parallel
Strand 3	G	435	440	anti-parallel
Strand 4	G	450	451	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	61	first strand
Strand 2	I	66	67	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	133	first strand
Strand 2	I	139	143	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	115	120	anti-parallel
Strand 3	A	483	488	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	415	416	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	518	first strand
Strand 2	A	524	526	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	898	first strand
Strand 2	A	907	910	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1090	first strand
Strand 2	A	1094	1101	anti-parallel
Strand 3	A	973	980	anti-parallel
Strand 4	A	1174	1178	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1018	first strand
Strand 2	A	1023	1024	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1185	1188	first strand
Strand 2	A	1193	1198	anti-parallel
Strand 3	A	1224	1231	anti-parallel
Strand 4	A	1213	1217	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1341	1342	first strand
Strand 2	A	1353	1354	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1606	1608	first strand
Strand 2	A	1631	1633	anti-parallel
Strand 3	A	1659	1660	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1642	1644	first strand
Strand 2	A	1715	1717	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1665	1667	first strand
Strand 2	A	1704	1706	parallel
Strand 3	A	1712	1713	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	50	57	first strand
Strand 2	P	33	45	anti-parallel
Strand 3	v	196	201	parallel
Strand 4	v	177	178	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	2	7	first strand
Strand 2	q	13	18	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	42	45	first strand
Strand 2	q	69	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AAV