Analysis of interatomic Contacts of Structural Units in PDB entry:
7AD8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AD8 entry

There are 10 chains in PDB entry 7AD8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	A 17	C 35
K	G 15	T 42
A	HIS 71	THR 720
F	VAL 4	ALA 65
B	MET 1	PHE 728
E	LEU 8	CYS 285
D	LEU 55	HIS 387
C	ASN 18	GLN 458
G	ILE 104	ARG 237
I	LYS 296	LYS 547

There are113 helices in PDB entry 7AD8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	101	Right-handed alpha
Helix 2	AA2	A	119	129	Right-handed alpha
Helix 3	AA3	A	132	140	Right-handed alpha
Helix 4	AA4	A	152	159	Right-handed alpha
Helix 5	AA5	A	181	189	Right-handed alpha
Helix 6	AA6	A	193	197	Right-handed 310
Helix 7	AA7	A	276	287	Right-handed alpha
Helix 8	AA8	A	319	328	Right-handed alpha
Helix 9	AA9	A	347	358	Right-handed alpha
Helix 10	AB1	A	369	382	Right-handed alpha
Helix 11	AB2	A	420	431	Right-handed alpha
Helix 12	AB3	A	443	446	Right-handed 310
Helix 13	AB4	A	453	458	Right-handed alpha
Helix 14	AB5	A	472	476	Right-handed 310
Helix 15	AB6	A	479	484	Right-handed alpha
Helix 16	AB7	A	492	499	Right-handed alpha
Helix 17	AB8	A	518	523	Right-handed alpha
Helix 18	AB9	A	529	536	Right-handed alpha
Helix 19	AC1	A	537	553	Right-handed alpha
Helix 20	AC2	A	565	573	Right-handed alpha
Helix 21	AC3	A	586	596	Right-handed alpha
Helix 22	AC4	A	634	638	Right-handed 310
Helix 23	AC5	A	639	643	Right-handed 310
Helix 24	AC6	A	668	677	Right-handed alpha
Helix 25	AC7	A	679	684	Right-handed 310
Helix 26	AC8	A	706	717	Right-handed alpha
Helix 27	AC9	F	13	23	Right-handed alpha
Helix 28	AD1	F	49	62	Right-handed alpha
Helix 29	AD2	B	18	33	Right-handed alpha
Helix 30	AD3	B	47	63	Right-handed alpha
Helix 31	AD4	B	76	99	Right-handed alpha
Helix 32	AD5	B	126	139	Right-handed alpha
Helix 33	AD6	B	144	148	Right-handed 310
Helix 34	AD7	B	155	165	Right-handed alpha
Helix 35	AD8	B	176	188	Right-handed alpha
Helix 36	AD9	B	190	198	Right-handed alpha
Helix 37	AE1	B	214	222	Right-handed alpha
Helix 38	AE2	B	238	246	Right-handed alpha
Helix 39	AE3	B	253	271	Right-handed alpha
Helix 40	AE4	B	327	345	Right-handed alpha
Helix 41	AE5	B	356	361	Right-handed alpha
Helix 42	AE6	B	374	387	Right-handed alpha
Helix 43	AE7	B	394	405	Right-handed alpha
Helix 44	AE8	B	446	451	Right-handed alpha
Helix 45	AE9	B	466	471	Right-handed alpha
Helix 46	AF1	B	513	528	Right-handed alpha
Helix 47	AF2	B	541	554	Right-handed alpha
Helix 48	AF3	B	557	565	Right-handed alpha
Helix 49	AF4	B	573	588	Right-handed alpha
Helix 50	AF5	B	602	608	Right-handed alpha
Helix 51	AF6	B	632	643	Right-handed alpha
Helix 52	AF7	B	647	657	Right-handed alpha
Helix 53	AF8	B	664	668	Right-handed 310
Helix 54	AF9	B	681	685	Right-handed 310
Helix 55	AG1	B	686	691	Right-handed alpha
Helix 56	AG2	B	709	725	Right-handed alpha
Helix 57	AG3	E	18	29	Right-handed alpha
Helix 58	AG4	E	34	49	Right-handed alpha
Helix 59	AG5	E	108	119	Right-handed alpha
Helix 60	AG6	E	133	148	Right-handed alpha
Helix 61	AG7	E	170	172	Right-handed 310
Helix 62	AG8	E	173	178	Right-handed alpha
Helix 63	AG9	E	178	186	Right-handed alpha
Helix 64	AH1	E	200	210	Right-handed alpha
Helix 65	AH2	E	222	231	Right-handed alpha
Helix 66	AH3	E	234	239	Right-handed alpha
Helix 67	AH4	D	68	73	Right-handed 310
Helix 68	AH5	D	79	96	Right-handed alpha
Helix 69	AH6	D	127	132	Right-handed alpha
Helix 70	AH7	D	133	137	Right-handed 310
Helix 71	AH8	D	147	155	Right-handed alpha
Helix 72	AH9	D	184	192	Right-handed alpha
Helix 73	AI1	D	206	216	Right-handed alpha
Helix 74	AI2	D	224	233	Right-handed alpha
Helix 75	AI3	D	314	320	Right-handed alpha
Helix 76	AI4	D	368	378	Right-handed alpha
Helix 77	AI5	C	19	25	Right-handed alpha
Helix 78	AI6	C	27	35	Right-handed alpha
Helix 79	AI7	C	39	47	Right-handed alpha
Helix 80	AI8	C	51	59	Right-handed alpha
Helix 81	AI9	C	80	93	Right-handed alpha
Helix 82	AJ1	C	111	122	Right-handed alpha
Helix 83	AJ2	C	146	161	Right-handed alpha
Helix 84	AJ3	C	162	164	Right-handed 310
Helix 85	AJ4	C	172	183	Right-handed alpha
Helix 86	AJ5	C	197	205	Right-handed alpha
Helix 87	AJ6	C	209	227	Right-handed alpha
Helix 88	AJ7	C	229	241	Right-handed alpha
Helix 89	AJ8	C	256	269	Right-handed alpha
Helix 90	AJ9	C	284	289	Right-handed 310
Helix 91	AK1	C	321	329	Right-handed alpha
Helix 92	AK2	C	347	356	Right-handed alpha
Helix 93	AK3	C	361	371	Right-handed alpha
Helix 94	AK4	C	384	400	Right-handed alpha
Helix 95	AK5	C	416	421	Right-handed alpha
Helix 96	AK6	C	422	429	Right-handed 310
Helix 97	AK7	C	444	448	Right-handed 310
Helix 98	AK8	C	450	457	Right-handed alpha
Helix 99	AK9	G	142	147	Right-handed alpha
Helix 100	AL1	G	183	194	Right-handed alpha
Helix 101	AL2	G	196	198	Right-handed 310
Helix 102	AL3	G	199	227	Right-handed alpha
Helix 103	AL4	G	227	236	Right-handed alpha
Helix 104	AL5	I	297	302	Right-handed alpha
Helix 105	AL6	I	312	322	Right-handed alpha
Helix 106	AL7	I	332	343	Right-handed alpha
Helix 107	AL8	I	399	411	Right-handed alpha
Helix 108	AL9	I	423	434	Right-handed alpha
Helix 109	AM1	I	440	445	Right-handed alpha
Helix 110	AM2	I	456	479	Right-handed alpha
Helix 111	AM3	I	485	505	Right-handed alpha
Helix 112	AM4	I	508	514	Right-handed alpha
Helix 113	AM5	I	522	547	Right-handed alpha

There are 17 sheets in PDB entry 7AD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	113	117	anti-parallel
Strand 3	A	105	108	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	170	first strand
Strand 2	A	175	179	anti-parallel
Strand 3	A	268	271	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	405	409	parallel
Strand 3	A	361	365	parallel
Strand 4	A	438	441	parallel
Strand 5	A	463	467	parallel
Strand 6	A	337	339	parallel
Strand 7	A	487	490	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	559	first strand
Strand 2	A	622	626	parallel
Strand 3	A	658	664	parallel
Strand 4	A	508	512	parallel
Strand 5	A	688	690	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	580	first strand
Strand 2	A	606	607	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	37	first strand
Strand 2	F	42	45	anti-parallel
Strand 3	F	8	11	anti-parallel
Strand 4	C	402	404	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	10	11	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	453	458	parallel
Strand 3	B	229	234	parallel
Strand 4	B	69	73	parallel
Strand 5	B	204	207	parallel
Strand 6	B	106	108	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	414	419	anti-parallel
Strand 4	B	351	352	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	493	first strand
Strand 2	B	675	679	parallel
Strand 3	B	617	620	parallel
Strand 4	B	535	539	parallel
Strand 5	B	594	599	parallel
Strand 6	B	566	569	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	69	first strand
Strand 2	E	56	62	anti-parallel
Strand 3	E	10	15	parallel
Strand 4	E	159	165	parallel
Strand 5	E	190	195	parallel
Strand 6	E	214	216	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	254	first strand
Strand 2	E	261	262	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	275	first strand
Strand 2	E	266	268	anti-parallel
Strand 3	D	279	280	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	121	first strand
Strand 2	D	103	109	anti-parallel
Strand 3	D	59	66	parallel
Strand 4	D	164	171	parallel
Strand 5	D	195	200	parallel
Strand 6	D	219	221	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	317	first strand
Strand 2	C	341	345	anti-parallel
Strand 3	C	333	338	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	409	first strand
Strand 2	C	441	443	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	140	first strand
Strand 2	G	180	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AD8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AD8