Analysis of interatomic Contacts of Structural Units in PDB entry:
7ADK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ADK entry

There are 2 chains in PDB entry 7ADK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 128	LYS 740
B	ASP 158	ASN 861

There are 55 helices in PDB entry 7ADK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	152	158	Right-handed alpha
Helix 2	AA2	A	181	195	Right-handed alpha
Helix 3	AA3	A	209	219	Right-handed alpha
Helix 4	AA4	A	223	225	Right-handed 310
Helix 5	AA5	A	226	236	Right-handed alpha
Helix 6	AA6	A	246	254	Right-handed alpha
Helix 7	AA7	A	258	268	Right-handed 310
Helix 8	AA8	A	269	274	Right-handed alpha
Helix 9	AA9	A	275	277	Right-handed 310
Helix 10	AB1	A	279	289	Right-handed alpha
Helix 11	AB2	A	290	291	Right-handed 310
Helix 12	AB3	A	292	296	Right-handed 310
Helix 13	AB4	A	300	309	Right-handed alpha
Helix 14	AB5	A	334	337	Right-handed 310
Helix 15	AB6	A	338	351	Right-handed alpha
Helix 16	AB7	A	363	370	Right-handed alpha
Helix 17	AB8	A	380	388	Right-handed alpha
Helix 18	AB9	A	391	394	Right-handed 310
Helix 19	AC1	A	425	443	Right-handed alpha
Helix 20	AC2	A	463	468	Right-handed alpha
Helix 21	AC3	A	518	523	Right-handed 310
Helix 22	AC4	A	557	561	Right-handed 310
Helix 23	AC5	A	566	578	Right-handed alpha
Helix 24	AC6	A	583	588	Right-handed 310
Helix 25	AC7	A	599	603	Right-handed 310
Helix 26	AC8	A	655	659	Right-handed 310
Helix 27	AC9	A	697	710	Right-handed alpha
Helix 28	AD1	A	711	716	Right-handed alpha
Helix 29	AD2	B	159	163	Right-handed 310
Helix 30	AD3	B	164	174	Right-handed alpha
Helix 31	AD4	B	175	193	Right-handed alpha
Helix 32	AD5	B	207	213	Right-handed alpha
Helix 33	AD6	B	219	227	Right-handed alpha
Helix 34	AD7	B	261	265	Right-handed 310
Helix 35	AD8	B	298	314	Right-handed alpha
Helix 36	AD9	B	316	323	Right-handed alpha
Helix 37	AE1	B	328	346	Right-handed alpha
Helix 38	AE2	B	354	359	Right-handed 310
Helix 39	AE3	B	360	376	Right-handed alpha
Helix 40	AE4	B	401	413	Right-handed alpha
Helix 41	AE5	B	448	453	Right-handed alpha
Helix 42	AE6	B	498	501	Right-handed 310
Helix 43	AE7	B	520	524	Right-handed 310
Helix 44	AE8	B	526	530	Right-handed 310
Helix 45	AE9	B	548	550	Right-handed 310
Helix 46	AF1	B	574	583	Right-handed alpha
Helix 47	AF2	B	602	607	Right-handed alpha
Helix 48	AF3	B	639	643	Right-handed 310
Helix 49	AF4	B	650	656	Right-handed alpha
Helix 50	AF5	B	669	673	Right-handed 310
Helix 51	AF6	B	687	692	Right-handed alpha
Helix 52	AF7	B	715	720	Right-handed alpha
Helix 53	AF8	B	823	832	Right-handed alpha
Helix 54	AF9	B	845	849	Right-handed 310
Helix 55	AG1	B	850	854	Right-handed 310

There are 14 sheets in PDB entry 7ADK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	138	144	anti-parallel
Strand 3	A	174	178	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	207	208	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	331	332	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	326	328	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	396	403	anti-parallel
Strand 3	A	415	422	anti-parallel
Strand 4	A	448	454	parallel
Strand 5	A	476	481	parallel
Strand 6	A	502	506	parallel
Strand 7	A	547	548	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	497	498	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	517	first strand
Strand 2	A	553	555	parallel
Strand 3	A	608	610	parallel
Strand 4	A	640	643	parallel
Strand 5	A	676	679	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	652	first strand
Strand 2	A	688	690	parallel
Strand 3	A	720	722	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	425	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	461	467	anti-parallel
Strand 4	B	486	493	anti-parallel
Strand 5	B	556	562	anti-parallel
Strand 6	B	565	566	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	507	first strand
Strand 2	B	541	546	anti-parallel
Strand 3	B	442	447	anti-parallel
Strand 4	B	427	433	anti-parallel
Strand 5	B	836	837	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	537	first strand
Strand 2	B	737	742	parallel
Strand 3	B	727	730	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	595	first strand
Strand 2	B	769	778	parallel
Strand 3	B	783	788	anti-parallel
Strand 4	B	745	747	anti-parallel
Strand 5	B	712	714	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	595	first strand
Strand 2	B	769	778	parallel
Strand 3	B	761	765	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	807	809	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ADK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ADK