Analysis of interatomic Contacts of Structural Units in PDB entry:
7ADO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ADO entry

There are 10 chains in PDB entry 7ADO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 23	ARG 993
B	TRP 12	LEU 292
C	PRO 4	MET 251
D	ARG 14	LEU 183
E	SER 4	LEU 100
F	PRO 11	TYR 110
G	PHE 45	ARG 152
H	VAL 4	LEU 209
I	THR 51	GLU 203
K	UNK 1	UNK 16

There are 63 helices in PDB entry 7ADO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	30	Right-handed alpha
Helix 2	AA2	A	446	450	Right-handed 310
Helix 3	AA3	A	463	473	Right-handed alpha
Helix 4	AA4	A	481	502	Right-handed alpha
Helix 5	AA5	A	655	666	Right-handed alpha
Helix 6	AA6	A	876	878	Right-handed 310
Helix 7	AA7	A	887	894	Right-handed alpha
Helix 8	AA8	A	961	967	Right-handed alpha
Helix 9	AA9	A	968	982	Right-handed alpha
Helix 10	AB1	A	983	992	Right-handed alpha
Helix 11	AB2	B	13	25	Right-handed alpha
Helix 12	AB3	B	31	41	Right-handed alpha
Helix 13	AB4	B	43	49	Right-handed alpha
Helix 14	AB5	B	51	67	Right-handed alpha
Helix 15	AB6	B	69	83	Right-handed alpha
Helix 16	AB7	B	87	100	Right-handed alpha
Helix 17	AB8	B	102	116	Right-handed alpha
Helix 18	AB9	B	121	134	Right-handed alpha
Helix 19	AC1	B	137	149	Right-handed alpha
Helix 20	AC2	B	154	168	Right-handed alpha
Helix 21	AC3	B	172	184	Right-handed alpha
Helix 22	AC4	B	188	203	Right-handed alpha
Helix 23	AC5	B	204	223	Right-handed alpha
Helix 24	AC6	B	226	240	Right-handed alpha
Helix 25	AC7	B	246	273	Right-handed alpha
Helix 26	AC8	B	281	292	Right-handed alpha
Helix 27	AC9	C	9	17	Right-handed alpha
Helix 28	AD1	C	17	39	Right-handed alpha
Helix 29	AD2	C	45	65	Right-handed alpha
Helix 30	AD3	C	69	82	Right-handed alpha
Helix 31	AD4	C	86	90	Right-handed 310
Helix 32	AD5	C	115	132	Right-handed alpha
Helix 33	AD6	C	148	152	Right-handed 310
Helix 34	AD7	C	167	179	Right-handed alpha
Helix 35	AD8	C	180	187	Right-handed 310
Helix 36	AD9	C	214	227	Right-handed alpha
Helix 37	AE1	C	236	242	Right-handed alpha
Helix 38	AE2	D	141	156	Right-handed alpha
Helix 39	AE3	D	160	165	Right-handed alpha
Helix 40	AE4	E	5	35	Right-handed alpha
Helix 41	AE5	E	42	64	Right-handed alpha
Helix 42	AE6	E	71	77	Right-handed 310
Helix 43	AE7	E	80	85	Right-handed alpha
Helix 44	AE8	E	87	91	Right-handed 310
Helix 45	AE9	E	95	100	Right-handed 310
Helix 46	AF1	F	17	44	Right-handed alpha
Helix 47	AF2	F	48	70	Right-handed alpha
Helix 48	AF3	F	71	74	Right-handed 310
Helix 49	AF4	F	81	86	Right-handed alpha
Helix 50	AF5	F	90	108	Right-handed alpha
Helix 51	AF6	G	57	65	Right-handed 310
Helix 52	AF7	H	7	21	Right-handed alpha
Helix 53	AF8	H	67	83	Right-handed alpha
Helix 54	AF9	H	84	86	Right-handed 310
Helix 55	AG1	H	105	116	Right-handed alpha
Helix 56	AG2	H	166	177	Right-handed alpha
Helix 57	AG3	H	179	183	Right-handed 310
Helix 58	AG4	H	185	190	Right-handed alpha
Helix 59	AG5	H	199	209	Right-handed alpha
Helix 60	AG6	I	91	103	Right-handed alpha
Helix 61	AG7	I	134	139	Right-handed alpha
Helix 62	AG8	I	197	203	Right-handed alpha
Helix 63	AG9	K	2	16	Right-handed alpha

There are 25 sheets in PDB entry 7ADO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	55	58	anti-parallel
Strand 3	A	63	64	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	92	first strand
Strand 2	A	97	101	anti-parallel
Strand 3	A	106	109	anti-parallel
Strand 4	A	119	122	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	134	first strand
Strand 2	A	142	146	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	161	166	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	179	first strand
Strand 2	A	185	192	anti-parallel
Strand 3	A	196	203	anti-parallel
Strand 4	A	209	216	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	244	248	anti-parallel
Strand 3	A	257	260	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	290	296	anti-parallel
Strand 3	A	299	305	anti-parallel
Strand 4	A	310	316	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	326	first strand
Strand 2	A	331	338	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	385	394	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	409	first strand
Strand 2	A	419	424	anti-parallel
Strand 3	A	430	433	anti-parallel
Strand 4	A	441	445	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	457	first strand
Strand 2	A	536	540	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	547	first strand
Strand 2	A	557	560	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	576	first strand
Strand 2	A	586	592	anti-parallel
Strand 3	A	599	605	anti-parallel
Strand 4	A	610	611	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	627	first strand
Strand 2	A	641	643	anti-parallel
Strand 3	A	649	651	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	699	first strand
Strand 2	A	680	685	anti-parallel
Strand 3	A	669	675	anti-parallel
Strand 4	D	176	181	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	712	first strand
Strand 2	A	740	746	anti-parallel
Strand 3	A	756	763	anti-parallel
Strand 4	A	769	776	anti-parallel
Strand 5	I	191	192	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	725	first strand
Strand 2	A	731	734	anti-parallel
Strand 3	A	802	813	anti-parallel
Strand 4	A	790	797	anti-parallel
Strand 5	A	783	787	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	725	first strand
Strand 2	A	731	734	anti-parallel
Strand 3	A	802	813	anti-parallel
Strand 4	A	832	840	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	845	849	first strand
Strand 2	A	860	864	anti-parallel
Strand 3	A	870	874	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	921	926	first strand
Strand 2	A	933	938	anti-parallel
Strand 3	A	943	947	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	165	166	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	49	first strand
Strand 2	G	84	86	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	96	first strand
Strand 2	G	108	111	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	63	first strand
Strand 2	H	25	32	anti-parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	123	126	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	145	first strand
Strand 2	H	152	153	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	82	86	first strand
Strand 2	I	69	77	anti-parallel
Strand 3	I	52	59	anti-parallel
Strand 4	I	107	112	anti-parallel
Strand 5	I	128	133	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	163	first strand
Strand 2	I	144	150	anti-parallel
Strand 3	I	185	188	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ADO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ADO