Analysis of interatomic Contacts of Structural Units in PDB entry:
7ADP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ADP entry

There are 8 chains in PDB entry 7ADP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 26	ARG 993
B	TRP 12	LEU 292
C	GLU 5	MET 251
D	ARG 14	LEU 183
E	SER 4	LEU 100
F	PRO 11	TYR 110
H	VAL 4	VAL 206
I	THR 51	PRO 194

There are 54 helices in PDB entry 7ADP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	240	242	Right-handed 310
Helix 3	AA3	A	448	450	Right-handed 310
Helix 4	AA4	A	482	502	Right-handed alpha
Helix 5	AA5	A	655	666	Right-handed alpha
Helix 6	AA6	A	876	879	Right-handed 310
Helix 7	AA7	A	962	992	Right-handed alpha
Helix 8	AA8	B	13	25	Right-handed alpha
Helix 9	AA9	B	31	44	Right-handed alpha
Helix 10	AB1	B	44	49	Right-handed alpha
Helix 11	AB2	B	54	59	Right-handed alpha
Helix 12	AB3	B	59	67	Right-handed alpha
Helix 13	AB4	B	70	83	Right-handed alpha
Helix 14	AB5	B	88	100	Right-handed alpha
Helix 15	AB6	B	102	117	Right-handed alpha
Helix 16	AB7	B	121	135	Right-handed alpha
Helix 17	AB8	B	136	151	Right-handed alpha
Helix 18	AB9	B	154	168	Right-handed alpha
Helix 19	AC1	B	173	182	Right-handed alpha
Helix 20	AC2	B	188	201	Right-handed alpha
Helix 21	AC3	B	204	223	Right-handed alpha
Helix 22	AC4	B	226	240	Right-handed alpha
Helix 23	AC5	B	246	272	Right-handed alpha
Helix 24	AC6	B	282	292	Right-handed alpha
Helix 25	AC7	C	9	39	Right-handed alpha
Helix 26	AC8	C	46	64	Right-handed alpha
Helix 27	AC9	C	69	82	Right-handed alpha
Helix 28	AD1	C	122	132	Right-handed alpha
Helix 29	AD2	C	145	147	Right-handed 310
Helix 30	AD3	C	148	153	Right-handed alpha
Helix 31	AD4	C	168	187	Right-handed alpha
Helix 32	AD5	C	215	227	Right-handed alpha
Helix 33	AD6	C	236	243	Right-handed alpha
Helix 34	AD7	D	161	166	Right-handed alpha
Helix 35	AD8	E	5	34	Right-handed alpha
Helix 36	AD9	E	43	64	Right-handed alpha
Helix 37	AE1	E	71	76	Right-handed alpha
Helix 38	AE2	E	77	79	Right-handed 310
Helix 39	AE3	E	80	86	Right-handed alpha
Helix 40	AE4	E	87	91	Right-handed 310
Helix 41	AE5	E	95	100	Right-handed 310
Helix 42	AE6	F	17	44	Right-handed alpha
Helix 43	AE7	F	48	71	Right-handed alpha
Helix 44	AE8	F	81	86	Right-handed alpha
Helix 45	AE9	F	89	109	Right-handed alpha
Helix 46	AF1	H	7	21	Right-handed alpha
Helix 47	AF2	H	67	85	Right-handed alpha
Helix 48	AF3	H	105	120	Right-handed alpha
Helix 49	AF4	H	166	177	Right-handed alpha
Helix 50	AF5	H	178	183	Right-handed 310
Helix 51	AF6	H	185	192	Right-handed alpha
Helix 52	AF7	H	199	206	Right-handed alpha
Helix 53	AF8	I	91	104	Right-handed alpha
Helix 54	AF9	I	134	139	Right-handed alpha

There are 26 sheets in PDB entry 7ADP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	55	58	anti-parallel
Strand 3	A	63	64	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	97	98	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	119	122	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	145	146	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	161	166	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	197	203	anti-parallel
Strand 4	A	214	215	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	244	248	anti-parallel
Strand 3	A	258	260	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	291	296	anti-parallel
Strand 3	A	299	305	anti-parallel
Strand 4	A	310	316	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	326	first strand
Strand 2	A	331	338	anti-parallel
Strand 3	A	373	379	anti-parallel
Strand 4	A	385	392	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	419	423	anti-parallel
Strand 3	A	429	434	anti-parallel
Strand 4	A	441	446	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	457	first strand
Strand 2	A	536	540	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	559	560	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	576	first strand
Strand 2	A	586	592	anti-parallel
Strand 3	A	599	604	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	627	first strand
Strand 2	A	641	643	anti-parallel
Strand 3	A	649	650	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	696	699	first strand
Strand 2	A	680	685	anti-parallel
Strand 3	A	669	675	anti-parallel
Strand 4	D	176	179	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	712	first strand
Strand 2	A	740	746	anti-parallel
Strand 3	A	756	763	anti-parallel
Strand 4	A	769	776	anti-parallel
Strand 5	I	191	192	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	734	first strand
Strand 2	A	802	813	anti-parallel
Strand 3	A	790	797	anti-parallel
Strand 4	A	783	786	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	734	first strand
Strand 2	A	802	813	anti-parallel
Strand 3	A	832	836	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	845	849	first strand
Strand 2	A	860	864	anti-parallel
Strand 3	A	870	874	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	921	926	first strand
Strand 2	A	933	938	anti-parallel
Strand 3	A	943	947	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	53	54	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	62	first strand
Strand 2	H	26	31	anti-parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	123	126	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	145	first strand
Strand 2	H	152	153	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	54	first strand
Strand 2	I	72	77	anti-parallel
Strand 3	I	82	87	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	69	70	first strand
Strand 2	I	57	59	anti-parallel
Strand 3	I	107	112	anti-parallel
Strand 4	I	128	133	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	163	first strand
Strand 2	I	144	150	anti-parallel
Strand 3	I	184	185	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ADP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ADP