Analysis of interatomic Contacts of Structural Units in PDB entry:
7AE5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AE5 entry

There are 3 chains in PDB entry 7AE5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 3	LYS 476
C	LYS 3	ASN 477
D	LYS 3	LYS 358

There are103 helices in PDB entry 7AE5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	7	18	Right-handed alpha
Helix 2	AA2	B	32	44	Right-handed alpha
Helix 3	AA3	B	70	78	Right-handed alpha
Helix 4	AA4	B	85	98	Right-handed alpha
Helix 5	AA5	B	108	116	Right-handed 310
Helix 6	AA6	B	124	128	Right-handed 310
Helix 7	AA7	B	188	197	Right-handed alpha
Helix 8	AA8	B	210	218	Right-handed alpha
Helix 9	AA9	B	226	235	Right-handed alpha
Helix 10	AB1	B	315	320	Right-handed alpha
Helix 11	AB2	B	322	337	Right-handed alpha
Helix 12	AB3	B	363	373	Right-handed alpha
Helix 13	AB4	B	377	382	Right-handed alpha
Helix 14	AB5	B	396	408	Right-handed alpha
Helix 15	AB6	B	463	476	Right-handed alpha
Helix 16	AB7	C	7	18	Right-handed alpha
Helix 17	AB8	C	32	44	Right-handed alpha
Helix 18	AB9	C	70	78	Right-handed alpha
Helix 19	AC1	C	85	97	Right-handed alpha
Helix 20	AC2	C	108	116	Right-handed 310
Helix 21	AC3	C	124	128	Right-handed 310
Helix 22	AC4	C	180	186	Right-handed 310
Helix 23	AC5	C	187	197	Right-handed alpha
Helix 24	AC6	C	210	218	Right-handed alpha
Helix 25	AC7	C	226	235	Right-handed alpha
Helix 26	AC8	C	315	321	Right-handed alpha
Helix 27	AC9	C	322	337	Right-handed alpha
Helix 28	AD1	C	363	373	Right-handed alpha
Helix 29	AD2	C	377	382	Right-handed alpha
Helix 30	AD3	C	396	408	Right-handed alpha
Helix 31	AD4	C	463	477	Right-handed alpha
Helix 32	AD5	D	7	18	Right-handed alpha
Helix 33	AD6	D	32	44	Right-handed alpha
Helix 34	AD7	D	70	78	Right-handed alpha
Helix 35	AD8	D	85	97	Right-handed alpha
Helix 36	AD9	D	112	116	Right-handed 310
Helix 37	AE1	D	124	128	Right-handed 310
Helix 38	AE2	D	156	160	Right-handed 310
Helix 39	AE3	D	187	197	Right-handed alpha
Helix 40	AE4	D	210	218	Right-handed alpha
Helix 41	AE5	D	226	235	Right-handed alpha
Helix 42	AE6	D	315	321	Right-handed alpha
Helix 43	AE7	D	322	337	Right-handed alpha
Helix 44	AE8	D	363	373	Right-handed alpha
Helix 45	AE9	D	377	382	Right-handed alpha
Helix 46	AF1	D	396	408	Right-handed alpha
Helix 47	AF2	D	463	476	Right-handed alpha
Helix 48	AF3	E	7	18	Right-handed alpha
Helix 49	AF4	E	32	44	Right-handed alpha
Helix 50	AF5	E	70	78	Right-handed alpha
Helix 51	AF6	E	85	97	Right-handed alpha
Helix 52	AF7	E	108	116	Right-handed 310
Helix 53	AF8	E	124	128	Right-handed 310
Helix 54	AF9	E	184	186	Right-handed 310
Helix 55	AG1	E	187	198	Right-handed alpha
Helix 56	AG2	E	210	218	Right-handed alpha
Helix 57	AG3	E	226	235	Right-handed alpha
Helix 58	AG4	E	315	320	Right-handed alpha
Helix 59	AG5	E	322	337	Right-handed alpha
Helix 60	AG6	E	363	373	Right-handed alpha
Helix 61	AG7	E	377	382	Right-handed alpha
Helix 62	AG8	E	396	408	Right-handed alpha
Helix 63	AG9	E	463	477	Right-handed alpha
Helix 64	AH1	F	7	18	Right-handed alpha
Helix 65	AH2	F	32	44	Right-handed alpha
Helix 66	AH3	F	70	78	Right-handed alpha
Helix 67	AH4	F	85	97	Right-handed alpha
Helix 68	AH5	F	108	116	Right-handed 310
Helix 69	AH6	F	124	128	Right-handed 310
Helix 70	AH7	F	187	194	Right-handed alpha
Helix 71	AH8	F	210	218	Right-handed alpha
Helix 72	AH9	F	226	235	Right-handed alpha
Helix 73	AI1	F	315	321	Right-handed alpha
Helix 74	AI2	F	322	337	Right-handed alpha
Helix 75	AI3	F	363	373	Right-handed alpha
Helix 76	AI4	F	377	382	Right-handed alpha
Helix 77	AI5	F	396	408	Right-handed alpha
Helix 78	AI6	F	463	477	Right-handed alpha
Helix 79	AI7	A	7	18	Right-handed alpha
Helix 80	AI8	A	32	43	Right-handed alpha
Helix 81	AI9	A	70	78	Right-handed alpha
Helix 82	AJ1	A	85	97	Right-handed alpha
Helix 83	AJ2	A	108	116	Right-handed 310
Helix 84	AJ3	A	124	128	Right-handed 310
Helix 85	AJ4	A	188	197	Right-handed alpha
Helix 86	AJ5	A	210	218	Right-handed alpha
Helix 87	AJ6	A	226	235	Right-handed alpha
Helix 88	AJ7	A	315	320	Right-handed alpha
Helix 89	AJ8	A	322	337	Right-handed alpha
Helix 90	AJ9	A	363	373	Right-handed alpha
Helix 91	AK1	A	377	382	Right-handed alpha
Helix 92	AK2	A	396	408	Right-handed alpha
Helix 93	AK3	A	463	477	Right-handed alpha
Helix 94	AK4	b	644	648	Right-handed 310
Helix 95	AK5	b	650	656	Right-handed alpha
Helix 96	AK6	c	644	648	Right-handed 310
Helix 97	AK7	c	650	656	Right-handed alpha
Helix 98	AK8	d	644	648	Right-handed 310
Helix 99	AK9	d	650	656	Right-handed alpha
Helix 100	AL1	e	650	656	Right-handed alpha
Helix 101	AL2	f	644	648	Right-handed 310
Helix 102	AL3	a	644	648	Right-handed 310
Helix 103	AL4	a	650	656	Right-handed alpha

There are 38 sheets in PDB entry 7AE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	50	53	parallel
Strand 3	B	62	65	anti-parallel
Strand 4	B	304	306	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	241	244	parallel
Strand 3	B	252	254	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	287	299	anti-parallel
Strand 3	B	259	265	anti-parallel
Strand 4	B	201	207	anti-parallel
Strand 5	B	147	150	anti-parallel
Strand 6	B	163	165	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	143	first strand
Strand 2	B	169	173	anti-parallel
Strand 3	B	176	179	anti-parallel
Strand 4	B	287	299	anti-parallel
Strand 5	B	271	273	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	347	first strand
Strand 2	B	352	357	anti-parallel
Strand 3	B	384	388	parallel
Strand 4	B	434	442	parallel
Strand 5	B	414	421	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	28	first strand
Strand 2	C	50	56	parallel
Strand 3	C	62	65	anti-parallel
Strand 4	C	304	306	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	241	244	parallel
Strand 3	C	252	254	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	119	first strand
Strand 2	C	287	299	anti-parallel
Strand 3	C	176	179	anti-parallel
Strand 4	C	169	173	anti-parallel
Strand 5	C	142	143	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	119	first strand
Strand 2	C	287	299	anti-parallel
Strand 3	C	259	273	anti-parallel
Strand 4	C	201	207	anti-parallel
Strand 5	C	147	150	anti-parallel
Strand 6	C	163	166	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	347	first strand
Strand 2	C	352	357	anti-parallel
Strand 3	C	384	388	parallel
Strand 4	C	434	442	parallel
Strand 5	C	414	421	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	50	53	parallel
Strand 3	D	62	65	anti-parallel
Strand 4	D	304	306	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	241	244	parallel
Strand 3	D	252	254	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	119	first strand
Strand 2	D	287	299	anti-parallel
Strand 3	D	259	265	anti-parallel
Strand 4	D	201	207	anti-parallel
Strand 5	D	147	150	anti-parallel
Strand 6	D	163	165	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	169	173	anti-parallel
Strand 3	D	176	179	anti-parallel
Strand 4	D	287	299	anti-parallel
Strand 5	D	271	273	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	278	first strand
Strand 2	D	282	283	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	347	first strand
Strand 2	D	352	357	anti-parallel
Strand 3	D	384	388	parallel
Strand 4	D	434	441	parallel
Strand 5	D	414	421	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	24	first strand
Strand 2	E	50	53	parallel
Strand 3	E	62	65	anti-parallel
Strand 4	E	304	306	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	106	first strand
Strand 2	E	241	244	parallel
Strand 3	E	252	254	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	119	first strand
Strand 2	E	287	299	anti-parallel
Strand 3	E	176	179	anti-parallel
Strand 4	E	169	171	anti-parallel
Strand 5	E	142	143	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	119	first strand
Strand 2	E	287	299	anti-parallel
Strand 3	E	259	273	anti-parallel
Strand 4	E	201	207	anti-parallel
Strand 5	E	147	150	anti-parallel
Strand 6	E	163	165	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	347	first strand
Strand 2	E	352	357	anti-parallel
Strand 3	E	384	388	parallel
Strand 4	E	434	441	parallel
Strand 5	E	414	421	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	24	first strand
Strand 2	F	50	53	parallel
Strand 3	F	62	65	anti-parallel
Strand 4	F	304	306	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	106	first strand
Strand 2	F	241	244	parallel
Strand 3	F	252	254	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	119	first strand
Strand 2	F	287	299	anti-parallel
Strand 3	F	259	273	anti-parallel
Strand 4	F	201	207	anti-parallel
Strand 5	F	147	150	anti-parallel
Strand 6	F	163	165	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	119	first strand
Strand 2	F	287	299	anti-parallel
Strand 3	F	176	179	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	143	first strand
Strand 2	F	169	170	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	347	first strand
Strand 2	F	352	357	anti-parallel
Strand 3	F	384	389	parallel
Strand 4	F	434	442	parallel
Strand 5	F	414	421	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	50	53	parallel
Strand 3	A	62	65	anti-parallel
Strand 4	A	304	306	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	241	244	parallel
Strand 3	A	252	254	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	287	299	anti-parallel
Strand 3	A	259	265	anti-parallel
Strand 4	A	201	207	anti-parallel
Strand 5	A	147	150	anti-parallel
Strand 6	A	163	165	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	169	173	anti-parallel
Strand 3	A	176	179	anti-parallel
Strand 4	A	287	299	anti-parallel
Strand 5	A	271	273	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	347	first strand
Strand 2	A	352	357	anti-parallel
Strand 3	A	384	388	parallel
Strand 4	A	434	442	parallel
Strand 5	A	414	421	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	611	616	first strand
Strand 2	b	624	628	anti-parallel
Strand 3	b	634	636	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	611	616	first strand
Strand 2	c	624	628	anti-parallel
Strand 3	c	634	636	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	611	616	first strand
Strand 2	d	624	628	anti-parallel
Strand 3	d	634	636	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	611	616	first strand
Strand 2	e	624	628	anti-parallel
Strand 3	e	634	636	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	611	616	first strand
Strand 2	f	624	628	anti-parallel
Strand 3	f	634	636	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	611	616	first strand
Strand 2	a	624	628	anti-parallel
Strand 3	a	634	636	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AE5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AE5