Analysis of interatomic Contacts of Structural Units in PDB entry:
7AF3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AF3 entry

There are 11 chains in PDB entry 7AF3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	C 931	U 965
1	A 968	G 1206
1	C 1208	G 1386
C	GLY 2	ALA 212
G	PRO 2	ALA 152
I	ASN 4	ARG 130
J	ASN 3	LEU 102
M	ALA 2	ILE 116
N	ALA 2	TRP 101
S	PRO 2	ALA 84
B	VAL 4	GLN 227

There are 45 helices in PDB entry 7AF3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	8	12	Right-handed 310
Helix 2	AA2	C	25	48	Right-handed alpha
Helix 3	AA3	C	72	78	Right-handed alpha
Helix 4	AA4	C	81	95	Right-handed alpha
Helix 5	AA5	C	108	111	Right-handed 310
Helix 6	AA6	C	112	125	Right-handed alpha
Helix 7	AA7	C	129	144	Right-handed alpha
Helix 8	AA8	C	156	160	Right-handed 310
Helix 9	AA9	G	20	31	Right-handed alpha
Helix 10	AB1	G	35	53	Right-handed alpha
Helix 11	AB2	G	57	67	Right-handed alpha
Helix 12	AB3	G	92	110	Right-handed alpha
Helix 13	AB4	G	116	129	Right-handed alpha
Helix 14	AB5	G	134	148	Right-handed alpha
Helix 15	AB6	G	149	152	Right-handed 310
Helix 16	AB7	I	34	39	Right-handed alpha
Helix 17	AB8	I	42	56	Right-handed alpha
Helix 18	AB9	I	71	91	Right-handed alpha
Helix 19	AC1	I	94	101	Right-handed alpha
Helix 20	AC2	J	14	32	Right-handed alpha
Helix 21	AC3	J	80	89	Right-handed alpha
Helix 22	AC4	M	14	22	Right-handed alpha
Helix 23	AC5	M	26	38	Right-handed alpha
Helix 24	AC6	M	49	61	Right-handed alpha
Helix 25	AC7	M	66	84	Right-handed alpha
Helix 26	AC8	M	85	93	Right-handed alpha
Helix 27	AC9	M	106	111	Right-handed alpha
Helix 28	AD1	N	3	17	Right-handed alpha
Helix 29	AD2	N	20	32	Right-handed alpha
Helix 30	AD3	N	37	51	Right-handed alpha
Helix 31	AD4	N	52	60	Right-handed 310
Helix 32	AD5	N	81	90	Right-handed alpha
Helix 33	AD6	S	12	26	Right-handed alpha
Helix 34	AD7	S	41	45	Right-handed 310
Helix 35	AD8	S	63	67	Right-handed 310
Helix 36	AD9	S	70	74	Right-handed 310
Helix 37	AE1	B	5	13	Right-handed alpha
Helix 38	AE2	B	24	29	Right-handed 310
Helix 39	AE3	B	42	63	Right-handed alpha
Helix 40	AE4	B	76	87	Right-handed alpha
Helix 41	AE5	B	103	124	Right-handed alpha
Helix 42	AE6	B	130	149	Right-handed alpha
Helix 43	AE7	B	169	180	Right-handed alpha
Helix 44	AE8	B	192	196	Right-handed 310
Helix 45	AE9	B	206	227	Right-handed alpha

There are 10 sheets in PDB entry 7AF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	58	first strand
Strand 2	C	65	70	anti-parallel
Strand 3	C	101	105	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	171	first strand
Strand 2	C	148	155	anti-parallel
Strand 3	C	194	206	anti-parallel
Strand 4	C	180	191	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	75	first strand
Strand 2	G	88	90	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	12	first strand
Strand 2	I	15	22	anti-parallel
Strand 3	I	62	68	anti-parallel
Strand 4	I	28	30	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	52	first strand
Strand 2	J	62	76	anti-parallel
Strand 3	J	6	12	anti-parallel
Strand 4	J	97	101	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	52	first strand
Strand 2	J	62	76	anti-parallel
Strand 3	N	97	98	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	73	74	first strand
Strand 2	N	79	80	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	31	33	first strand
Strand 2	S	48	52	parallel
Strand 3	S	57	61	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	38	41	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	67	70	parallel
Strand 3	B	160	164	parallel
Strand 4	B	183	187	parallel
Strand 5	B	198	201	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AF3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AF3