Analysis of interatomic Contacts of Structural Units in PDB entry:
7AFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AFS entry

There is 1 chain in PDB entry 7AFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 7AFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 26Right-handed 310
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
44 54Right-handed alpha
Helix 4
AA4
A
62 72Right-handed alpha
Helix 5
AA5
A
73 80Right-handed 310
Helix 6
AA6
A
142 147Right-handed alpha
Helix 7
AA7
A
170 174Right-handed 310
Helix 8
AA8
A
178 195Right-handed alpha
Helix 9
AA9
A
212 224Right-handed alpha
Helix 10
AB1
A
232 236Right-handed 310
Helix 11
AB2
A
238 243Right-handed alpha
Helix 12
AB3
A
260 267Right-handed alpha
Helix 13
AB4
A
321 333Right-handed alpha
Helix 14
AB5
A
347 356Right-handed alpha
Helix 15
AB6
A
357 359Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 7AFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
28 30parallel
Strand 3
A
59 61parallel
Strand 4
A
82 84parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
129 133anti-parallel
Strand 5
A
161 164parallel
Strand 6
A
336 339parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
155 156anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
227 228parallel
Strand 3
A
253 254parallel
Strand 4
A
200 204parallel
Strand 5
A
283 290parallel
Strand 6
A
311 315parallel
Strand 7
A
304 308anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
280 281anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il