Analysis of interatomic Contacts of Structural Units in PDB entry:
7AFT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AFT entry

There are 8 chains in PDB entry 7AFT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 10	PHE 468
B	ARG 51	PHE 82
C	VAL 26	VAL 80
D	THR 3	ASP 612
E	ASN 69	ARG 203
F	THR 3	GLY 192
G	UNK 150	UNK 209
H	UNK 1	UNK 13

There are 51 helices in PDB entry 7AFT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	48	Right-handed alpha
Helix 2	AA2	A	82	98	Right-handed alpha
Helix 3	AA3	A	108	137	Right-handed alpha
Helix 4	AA4	A	148	173	Right-handed alpha
Helix 5	AA5	A	179	199	Right-handed alpha
Helix 6	AA6	A	213	225	Right-handed alpha
Helix 7	AA7	A	227	237	Right-handed alpha
Helix 8	AA8	A	243	261	Right-handed alpha
Helix 9	AA9	A	290	310	Right-handed alpha
Helix 10	AB1	A	361	384	Right-handed alpha
Helix 11	AB2	A	387	399	Right-handed alpha
Helix 12	AB3	A	408	440	Right-handed alpha
Helix 13	AB4	A	444	466	Right-handed alpha
Helix 14	AB5	B	53	81	Right-handed alpha
Helix 15	AB6	C	27	37	Right-handed alpha
Helix 16	AB7	C	43	80	Right-handed alpha
Helix 17	AB8	D	15	34	Right-handed alpha
Helix 18	AB9	D	62	66	Right-handed 310
Helix 19	AC1	D	68	78	Right-handed alpha
Helix 20	AC2	D	94	113	Right-handed alpha
Helix 21	AC3	D	211	217	Right-handed alpha
Helix 22	AC4	D	218	249	Right-handed alpha
Helix 23	AC5	D	255	268	Right-handed alpha
Helix 24	AC6	D	276	284	Right-handed alpha
Helix 25	AC7	D	287	294	Right-handed alpha
Helix 26	AC8	D	298	311	Right-handed alpha
Helix 27	AC9	D	318	343	Right-handed alpha
Helix 28	AD1	D	345	362	Right-handed alpha
Helix 29	AD2	D	378	386	Right-handed alpha
Helix 30	AD3	D	391	398	Right-handed alpha
Helix 31	AD4	D	399	408	Right-handed alpha
Helix 32	AD5	D	411	424	Right-handed alpha
Helix 33	AD6	D	466	470	Right-handed 310
Helix 34	AD7	D	480	486	Right-handed alpha
Helix 35	AD8	D	488	494	Right-handed alpha
Helix 36	AD9	D	537	545	Right-handed 310
Helix 37	AE1	E	71	83	Right-handed alpha
Helix 38	AE2	E	88	124	Right-handed alpha
Helix 39	AE3	E	128	156	Right-handed alpha
Helix 40	AE4	E	162	195	Right-handed alpha
Helix 41	AE5	F	21	42	Right-handed alpha
Helix 42	AE6	F	51	71	Right-handed alpha
Helix 43	AE7	F	73	91	Right-handed alpha
Helix 44	AE8	F	97	120	Right-handed alpha
Helix 45	AE9	F	122	136	Right-handed alpha
Helix 46	AF1	F	139	153	Right-handed alpha
Helix 47	AF2	F	156	168	Right-handed alpha
Helix 48	AF3	F	174	192	Right-handed alpha
Helix 49	AF4	G	151	172	Right-handed alpha
Helix 50	AF5	G	184	209	Right-handed alpha
Helix 51	AF6	H	2	10	Right-handed alpha

There are 5 sheets in PDB entry 7AFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	209	211	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	A	400	402	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	428	429	first strand
Strand 2	D	450	457	anti-parallel
Strand 3	D	433	436	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	428	429	first strand
Strand 2	D	450	457	anti-parallel
Strand 3	D	569	574	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	532	first strand
Strand 2	D	513	519	anti-parallel
Strand 3	D	585	594	anti-parallel
Strand 4	D	602	609	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AFT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AFT