Analysis of interatomic Contacts of Structural Units in PDB entry:
7AGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AGD entry

There are 12 chains in PDB entry 7AGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	VAL 339
B	ASP 1	VAL 339
C	ASP 1	VAL 339
D	ASP 1	VAL 339
I	VAL 2	VAL 3
I	ALA 5	ALA 5
J	VAL 2	VAL 3
J	ALA 5	ALA 5
K	VAL 2	VAL 3
K	ALA 5	ALA 5
L	VAL 2	VAL 3
L	ALA 5	ALA 5

There are 20 helices in PDB entry 7AGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	64	Right-handed 310
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	142	150	Right-handed alpha
Helix 4	AA4	A	229	241	Right-handed alpha
Helix 5	AA5	A	305	310	Right-handed alpha
Helix 6	AA6	B	60	64	Right-handed 310
Helix 7	AA7	B	122	126	Right-handed 310
Helix 8	AA8	B	142	150	Right-handed alpha
Helix 9	AA9	B	229	241	Right-handed alpha
Helix 10	AB1	B	305	310	Right-handed alpha
Helix 11	AB2	C	60	64	Right-handed 310
Helix 12	AB3	C	122	126	Right-handed 310
Helix 13	AB4	C	142	150	Right-handed alpha
Helix 14	AB5	C	229	241	Right-handed alpha
Helix 15	AB6	C	305	310	Right-handed alpha
Helix 16	AB7	D	60	64	Right-handed 310
Helix 17	AB8	D	122	126	Right-handed 310
Helix 18	AB9	D	142	150	Right-handed alpha
Helix 19	AC1	D	229	241	Right-handed alpha
Helix 20	AC2	D	305	310	Right-handed alpha

There are 22 sheets in PDB entry 7AGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	77	first strand
Strand 2	A	83	95	anti-parallel
Strand 3	A	14	20	anti-parallel
Strand 4	A	3	9	anti-parallel
Strand 5	A	169	174	anti-parallel
Strand 6	A	157	161	anti-parallel
Strand 7	A	312	317	anti-parallel
Strand 8	A	322	327	anti-parallel
Strand 9	A	187	190	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	77	first strand
Strand 2	A	83	95	anti-parallel
Strand 3	A	98	111	anti-parallel
Strand 4	A	38	47	parallel
Strand 5	A	117	119	anti-parallel
Strand 6	A	25	32	parallel
Strand 7	A	14	20	anti-parallel
Strand 8	A	3	9	anti-parallel
Strand 9	A	169	174	anti-parallel
Strand 10	A	157	161	anti-parallel
Strand 11	A	312	317	anti-parallel
Strand 12	A	322	327	anti-parallel
Strand 13	A	187	190	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	336	338	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	279	first strand
Strand 2	A	265	270	anti-parallel
Strand 3	A	198	206	anti-parallel
Strand 4	A	209	219	anti-parallel
Strand 5	A	303	304	parallel
Strand 6	A	226	228	anti-parallel
Strand 7	A	296	298	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	252	256	anti-parallel
Strand 3	A	292	294	anti-parallel
Strand 4	A	284	286	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	77	first strand
Strand 2	B	83	95	anti-parallel
Strand 3	B	14	20	anti-parallel
Strand 4	B	3	9	anti-parallel
Strand 5	B	169	174	anti-parallel
Strand 6	B	157	161	anti-parallel
Strand 7	B	312	317	anti-parallel
Strand 8	B	322	327	anti-parallel
Strand 9	B	187	190	anti-parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	77	first strand
Strand 2	B	83	95	anti-parallel
Strand 3	B	98	111	anti-parallel
Strand 4	B	38	47	parallel
Strand 5	B	117	119	anti-parallel
Strand 6	B	25	32	parallel
Strand 7	B	14	20	anti-parallel
Strand 8	B	3	9	anti-parallel
Strand 9	B	169	174	anti-parallel
Strand 10	B	157	161	anti-parallel
Strand 11	B	312	317	anti-parallel
Strand 12	B	322	327	anti-parallel
Strand 13	B	187	190	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	336	338	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	198	206	anti-parallel
Strand 3	B	265	270	anti-parallel
Strand 4	B	275	279	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	198	206	anti-parallel
Strand 3	B	216	219	anti-parallel
Strand 4	B	303	304	parallel
Strand 5	B	226	228	anti-parallel
Strand 6	B	296	298	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	252	256	anti-parallel
Strand 3	B	292	294	anti-parallel
Strand 4	B	284	286	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	77	first strand
Strand 2	C	83	95	anti-parallel
Strand 3	C	14	20	anti-parallel
Strand 4	C	3	9	anti-parallel
Strand 5	C	169	174	anti-parallel
Strand 6	C	157	161	anti-parallel
Strand 7	C	312	317	anti-parallel
Strand 8	C	322	327	anti-parallel
Strand 9	C	187	190	anti-parallel

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There are 13 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	77	first strand
Strand 2	C	83	95	anti-parallel
Strand 3	C	98	111	anti-parallel
Strand 4	C	38	47	parallel
Strand 5	C	117	119	anti-parallel
Strand 6	C	25	32	parallel
Strand 7	C	14	20	anti-parallel
Strand 8	C	3	9	anti-parallel
Strand 9	C	169	174	anti-parallel
Strand 10	C	157	161	anti-parallel
Strand 11	C	312	317	anti-parallel
Strand 12	C	322	327	anti-parallel
Strand 13	C	187	190	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	336	338	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	279	first strand
Strand 2	C	265	270	anti-parallel
Strand 3	C	198	206	anti-parallel
Strand 4	C	209	219	anti-parallel
Strand 5	C	303	304	parallel
Strand 6	C	226	228	anti-parallel
Strand 7	C	296	298	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	252	256	anti-parallel
Strand 3	C	292	294	anti-parallel
Strand 4	C	284	286	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	77	first strand
Strand 2	D	83	95	anti-parallel
Strand 3	D	14	20	anti-parallel
Strand 4	D	3	9	anti-parallel
Strand 5	D	169	174	anti-parallel
Strand 6	D	157	161	anti-parallel
Strand 7	D	312	317	anti-parallel
Strand 8	D	322	327	anti-parallel
Strand 9	D	187	190	anti-parallel

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There are 13 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	77	first strand
Strand 2	D	83	95	anti-parallel
Strand 3	D	98	111	anti-parallel
Strand 4	D	38	47	parallel
Strand 5	D	117	119	anti-parallel
Strand 6	D	25	32	parallel
Strand 7	D	14	20	anti-parallel
Strand 8	D	3	9	anti-parallel
Strand 9	D	169	174	anti-parallel
Strand 10	D	157	161	anti-parallel
Strand 11	D	312	317	anti-parallel
Strand 12	D	322	327	anti-parallel
Strand 13	D	187	190	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	336	338	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	212	first strand
Strand 2	D	198	206	anti-parallel
Strand 3	D	265	270	anti-parallel
Strand 4	D	275	279	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	212	first strand
Strand 2	D	198	206	anti-parallel
Strand 3	D	216	219	anti-parallel
Strand 4	D	303	304	parallel
Strand 5	D	226	228	anti-parallel
Strand 6	D	296	298	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	248	first strand
Strand 2	D	251	256	anti-parallel
Strand 3	D	292	294	anti-parallel
Strand 4	D	284	286	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AGD