Analysis of interatomic Contacts of Structural Units in PDB entry:
7AGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AGJ entry

There are 2 chains in PDB entry 7AGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 787
B
 MET 3SER 787
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 7AGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
51 66Right-handed alpha
Helix 4
AA4
A
73 95Right-handed alpha
Helix 5
AA5
A
109 111Right-handed 310
Helix 6
AA6
A
112 122Right-handed alpha
Helix 7
AA7
A
128 133Right-handed alpha
Helix 8
AA8
A
135 144Right-handed alpha
Helix 9
AA9
A
147 154Right-handed 310
Helix 10
AB1
A
155 166Right-handed alpha
Helix 11
AB2
A
178 191Right-handed alpha
Helix 12
AB3
A
198 212Right-handed alpha
Helix 13
AB4
A
218 225Right-handed alpha
Helix 14
AB5
A
243 261Right-handed alpha
Helix 15
AB6
A
288 302Right-handed alpha
Helix 16
AB7
A
322 327Right-handed alpha
Helix 17
AB8
A
350 359Right-handed alpha
Helix 18
AB9
A
367 378Right-handed alpha
Helix 19
AC1
A
417 432Right-handed alpha
Helix 20
AC2
A
433 435Right-handed 310
Helix 21
AC3
A
442 457Right-handed alpha
Helix 22
AC4
A
464 471Right-handed alpha
Helix 23
AC5
A
533 555Right-handed alpha
Helix 24
AC6
A
559 570Right-handed alpha
Helix 25
AC7
A
578 585Right-handed alpha
Helix 26
AC8
A
592 622Right-handed alpha
Helix 27
AC9
A
631 635Right-handed 310
Helix 28
AD1
A
641 652Right-handed alpha
Helix 29
AD2
A
657 669Right-handed alpha
Helix 30
AD3
A
681 689Right-handed alpha
Helix 31
AD4
A
717 722Right-handed alpha
Helix 32
AD5
A
727 731Right-handed 310
Helix 33
AD6
A
733 744Right-handed alpha
Helix 34
AD7
A
745 747Right-handed 310
Helix 35
AD8
A
763 778Right-handed alpha
Helix 36
AD9
B
16 29Right-handed alpha
Helix 37
AE1
B
34 45Right-handed alpha
Helix 38
AE2
B
51 66Right-handed alpha
Helix 39
AE3
B
73 95Right-handed alpha
Helix 40
AE4
B
109 111Right-handed 310
Helix 41
AE5
B
112 122Right-handed alpha
Helix 42
AE6
B
128 133Right-handed alpha
Helix 43
AE7
B
135 144Right-handed alpha
Helix 44
AE8
B
147 154Right-handed 310
Helix 45
AE9
B
155 166Right-handed alpha
Helix 46
AF1
B
178 191Right-handed alpha
Helix 47
AF2
B
198 212Right-handed alpha
Helix 48
AF3
B
218 225Right-handed alpha
Helix 49
AF4
B
243 261Right-handed alpha
Helix 50
AF5
B
289 302Right-handed alpha
Helix 51
AF6
B
322 327Right-handed alpha
Helix 52
AF7
B
350 359Right-handed alpha
Helix 53
AF8
B
367 378Right-handed alpha
Helix 54
AF9
B
417 432Right-handed alpha
Helix 55
AG1
B
433 435Right-handed 310
Helix 56
AG2
B
442 457Right-handed alpha
Helix 57
AG3
B
464 471Right-handed alpha
Helix 58
AG4
B
533 555Right-handed alpha
Helix 59
AG5
B
559 570Right-handed alpha
Helix 60
AG6
B
578 585Right-handed alpha
Helix 61
AG7
B
592 622Right-handed alpha
Helix 62
AG8
B
631 635Right-handed 310
Helix 63
AG9
B
641 652Right-handed alpha
Helix 64
AH1
B
657 669Right-handed alpha
Helix 65
AH2
B
681 689Right-handed alpha
Helix 66
AH3
B
717 722Right-handed alpha
Helix 67
AH4
B
727 731Right-handed 310
Helix 68
AH5
B
733 744Right-handed alpha
Helix 69
AH6
B
745 747Right-handed 310
Helix 70
AH7
B
763 778Right-handed alpha
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There are 12 sheets in PDB entry 7AGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
13 14anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
523 527anti-parallel
Strand 3
A
573 577parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 521first strand
Strand 2
A
235 239anti-parallel
Strand 3
A
264 267parallel
Strand 4
A
312 317parallel
Strand 5
A
343 349parallel
Strand 6
A
460 463parallel
Strand 7
A
781 782anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 366first strand
Strand 2
A
437 441anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 497first strand
Strand 2
A
508 514anti-parallel
Strand 3
B
508 514anti-parallel
Strand 4
B
496 497anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
A
508 514anti-parallel
Strand 3
B
508 514anti-parallel
Strand 4
B
501 502anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
755 756first strand
Strand 2
A
785 786parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
13 14anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 217first strand
Strand 2
B
523 527anti-parallel
Strand 3
B
573 577parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 521first strand
Strand 2
B
235 239anti-parallel
Strand 3
B
264 267parallel
Strand 4
B
312 317parallel
Strand 5
B
344 349parallel
Strand 6
B
460 463parallel
Strand 7
B
781 782anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 366first strand
Strand 2
B
437 441anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
755 756first strand
Strand 2
B
785 786parallel
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