Analysis of interatomic Contacts of Structural Units in PDB entry:
7AGK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AGK entry

There are 4 chains in PDB entry 7AGK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 2	PHE 297
A	MET 1	VAL 298
B	MET 1	LEU 299
C	MET 1	GLU 300

There are 52 helices in PDB entry 7AGK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	39	51	Right-handed alpha
Helix 2	AA2	D	64	77	Right-handed alpha
Helix 3	AA3	D	119	125	Right-handed 310
Helix 4	AA4	D	126	130	Right-handed 310
Helix 5	AA5	D	139	153	Right-handed alpha
Helix 6	AA6	D	168	174	Right-handed alpha
Helix 7	AA7	D	182	190	Right-handed alpha
Helix 8	AA8	D	193	203	Right-handed alpha
Helix 9	AA9	D	214	216	Right-handed 310
Helix 10	AB1	D	241	257	Right-handed alpha
Helix 11	AB2	D	259	277	Right-handed alpha
Helix 12	AB3	D	279	284	Right-handed 310
Helix 13	AB4	D	286	296	Right-handed alpha
Helix 14	AB5	A	39	51	Right-handed alpha
Helix 15	AB6	A	64	77	Right-handed alpha
Helix 16	AB7	A	119	125	Right-handed 310
Helix 17	AB8	A	126	130	Right-handed 310
Helix 18	AB9	A	139	153	Right-handed alpha
Helix 19	AC1	A	168	174	Right-handed alpha
Helix 20	AC2	A	182	190	Right-handed alpha
Helix 21	AC3	A	193	203	Right-handed alpha
Helix 22	AC4	A	214	216	Right-handed 310
Helix 23	AC5	A	241	258	Right-handed alpha
Helix 24	AC6	A	259	277	Right-handed alpha
Helix 25	AC7	A	279	284	Right-handed 310
Helix 26	AC8	A	286	296	Right-handed alpha
Helix 27	AC9	B	39	51	Right-handed alpha
Helix 28	AD1	B	64	77	Right-handed alpha
Helix 29	AD2	B	119	125	Right-handed 310
Helix 30	AD3	B	126	130	Right-handed 310
Helix 31	AD4	B	139	153	Right-handed alpha
Helix 32	AD5	B	168	174	Right-handed alpha
Helix 33	AD6	B	182	190	Right-handed alpha
Helix 34	AD7	B	193	203	Right-handed alpha
Helix 35	AD8	B	214	216	Right-handed 310
Helix 36	AD9	B	241	258	Right-handed alpha
Helix 37	AE1	B	259	277	Right-handed alpha
Helix 38	AE2	B	279	284	Right-handed 310
Helix 39	AE3	B	286	296	Right-handed alpha
Helix 40	AE4	C	39	51	Right-handed alpha
Helix 41	AE5	C	64	77	Right-handed alpha
Helix 42	AE6	C	119	125	Right-handed 310
Helix 43	AE7	C	126	130	Right-handed 310
Helix 44	AE8	C	139	153	Right-handed alpha
Helix 45	AE9	C	168	174	Right-handed alpha
Helix 46	AF1	C	182	190	Right-handed alpha
Helix 47	AF2	C	193	203	Right-handed alpha
Helix 48	AF3	C	214	216	Right-handed 310
Helix 49	AF4	C	241	258	Right-handed alpha
Helix 50	AF5	C	259	277	Right-handed alpha
Helix 51	AF6	C	279	283	Right-handed 310
Helix 52	AF7	C	286	296	Right-handed alpha

There are 12 sheets in PDB entry 7AGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	58	first strand
Strand 2	D	3	7	parallel
Strand 3	D	132	136	parallel
Strand 4	D	156	161	parallel
Strand 5	D	177	181	parallel
Strand 6	D	208	212	parallel
Strand 7	D	218	222	anti-parallel
Strand 8	D	225	229	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	38	first strand
Strand 2	D	11	17	anti-parallel
Strand 3	D	94	99	parallel
Strand 4	D	105	110	anti-parallel
Strand 5	C	26	29	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	C	105	110	parallel
Strand 3	C	93	99	anti-parallel
Strand 4	C	11	17	parallel
Strand 5	C	32	38	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	85	86	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	3	7	parallel
Strand 3	A	132	136	parallel
Strand 4	A	156	161	parallel
Strand 5	A	177	181	parallel
Strand 6	A	208	212	parallel
Strand 7	A	218	222	anti-parallel
Strand 8	A	225	229	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	11	17	anti-parallel
Strand 3	A	93	99	parallel
Strand 4	A	105	110	anti-parallel
Strand 5	B	26	29	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	B	105	110	parallel
Strand 3	B	93	99	anti-parallel
Strand 4	B	11	17	parallel
Strand 5	B	32	38	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	85	86	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	58	first strand
Strand 2	B	3	7	parallel
Strand 3	B	132	136	parallel
Strand 4	B	156	161	parallel
Strand 5	B	177	181	parallel
Strand 6	B	208	212	parallel
Strand 7	B	218	222	anti-parallel
Strand 8	B	225	229	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	85	86	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	3	7	parallel
Strand 3	C	132	136	parallel
Strand 4	C	156	161	parallel
Strand 5	C	177	181	parallel
Strand 6	C	208	212	parallel
Strand 7	C	218	222	anti-parallel
Strand 8	C	225	229	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	85	86	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AGK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AGK