Analysis of interatomic Contacts of Structural Units in PDB entry:
7AGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AGM entry

There are 2 chains in PDB entry 7AGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 37SER 254
B
 SER 38GLN 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7AGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 60Right-handed 310
Helix 2
AA2
A
85 104Right-handed alpha
Helix 3
AA3
A
121 133Right-handed alpha
Helix 4
AA4
A
162 167Right-handed alpha
Helix 5
AA5
A
167 183Right-handed alpha
Helix 6
AA6
A
202 208Right-handed alpha
Helix 7
AA7
A
222 231Right-handed alpha
Helix 8
AA8
A
231 254Right-handed alpha
Helix 9
AA9
B
56 60Right-handed 310
Helix 10
AB1
B
85 104Right-handed alpha
Helix 11
AB2
B
121 133Right-handed alpha
Helix 12
AB3
B
162 167Right-handed alpha
Helix 13
AB4
B
167 183Right-handed alpha
Helix 14
AB5
B
202 207Right-handed alpha
Helix 15
AB6
B
222 231Right-handed alpha
Helix 16
AB7
B
231 253Right-handed alpha
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There are 4 sheets in PDB entry 7AGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
44 49parallel
Strand 3
A
136 143parallel
Strand 4
A
212 219parallel
Strand 5
A
153 157anti-parallel
Strand 6
A
196 199parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
70 72anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
44 49parallel
Strand 3
B
136 143parallel
Strand 4
B
212 219parallel
Strand 5
B
153 157anti-parallel
Strand 6
B
196 199parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
70 72anti-parallel
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