Analysis of interatomic Contacts of Structural Units in PDB entry:
7AGZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AGZ entry

There are 2 chains in PDB entry 7AGZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 24	ASN 409
B	ALA 24	TYR 411

There are 38 helices in PDB entry 7AGZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	39	Right-handed alpha
Helix 2	AA2	A	49	61	Right-handed alpha
Helix 3	AA3	A	73	79	Right-handed alpha
Helix 4	AA4	A	81	92	Right-handed alpha
Helix 5	AA5	A	101	111	Right-handed alpha
Helix 6	AA6	A	124	131	Right-handed alpha
Helix 7	AA7	A	132	135	Right-handed 310
Helix 8	AA8	A	142	157	Right-handed alpha
Helix 9	AA9	A	180	192	Right-handed alpha
Helix 10	AB1	A	209	231	Right-handed alpha
Helix 11	AB2	A	234	238	Right-handed 310
Helix 12	AB3	A	244	251	Right-handed alpha
Helix 13	AB4	A	252	255	Right-handed 310
Helix 14	AB5	A	262	267	Right-handed 310
Helix 15	AB6	A	298	302	Right-handed 310
Helix 16	AB7	A	317	321	Right-handed 310
Helix 17	AB8	A	323	327	Right-handed 310
Helix 18	AB9	A	378	387	Right-handed alpha
Helix 19	AC1	A	389	401	Right-handed alpha
Helix 20	AC2	B	34	40	Right-handed alpha
Helix 21	AC3	B	49	61	Right-handed alpha
Helix 22	AC4	B	73	79	Right-handed alpha
Helix 23	AC5	B	81	92	Right-handed alpha
Helix 24	AC6	B	101	111	Right-handed alpha
Helix 25	AC7	B	124	130	Right-handed alpha
Helix 26	AC8	B	131	135	Right-handed 310
Helix 27	AC9	B	142	157	Right-handed alpha
Helix 28	AD1	B	180	192	Right-handed alpha
Helix 29	AD2	B	209	231	Right-handed alpha
Helix 30	AD3	B	234	238	Right-handed 310
Helix 31	AD4	B	244	251	Right-handed alpha
Helix 32	AD5	B	252	255	Right-handed 310
Helix 33	AD6	B	262	267	Right-handed alpha
Helix 34	AD7	B	298	302	Right-handed 310
Helix 35	AD8	B	317	321	Right-handed 310
Helix 36	AD9	B	323	327	Right-handed 310
Helix 37	AE1	B	378	387	Right-handed alpha
Helix 38	AE2	B	389	401	Right-handed alpha

There are 9 sheets in PDB entry 7AGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	340	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	365	372	anti-parallel
Strand 4	A	375	377	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	340	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	365	372	anti-parallel
Strand 4	A	279	284	anti-parallel
Strand 5	A	43	48	anti-parallel
Strand 6	A	403	406	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	96	99	parallel
Strand 3	A	68	72	parallel
Strand 4	A	258	259	parallel
Strand 5	A	239	243	parallel
Strand 6	A	196	202	parallel
Strand 7	A	160	165	parallel
Strand 8	A	138	140	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	309	314	anti-parallel
Strand 3	A	350	353	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	303	304	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	291	first strand
Strand 2	B	309	314	anti-parallel
Strand 3	B	350	353	anti-parallel
Strand 4	B	337	341	anti-parallel
Strand 5	B	331	334	anti-parallel
Strand 6	B	365	372	anti-parallel
Strand 7	B	375	377	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	291	first strand
Strand 2	B	309	314	anti-parallel
Strand 3	B	350	353	anti-parallel
Strand 4	B	337	341	anti-parallel
Strand 5	B	331	334	anti-parallel
Strand 6	B	365	372	anti-parallel
Strand 7	B	279	284	anti-parallel
Strand 8	B	43	48	anti-parallel
Strand 9	B	403	406	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	96	99	parallel
Strand 3	B	68	72	parallel
Strand 4	B	258	259	parallel
Strand 5	B	239	243	parallel
Strand 6	B	196	202	parallel
Strand 7	B	160	165	parallel
Strand 8	B	138	140	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	297	first strand
Strand 2	B	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AGZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AGZ