Analysis of interatomic Contacts of Structural Units in PDB entry:
7AIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AIP entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7AIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 116GLY 733
A
 PHE 735ASN 915
A
 ASP 917ILE 1081
B
 PRO 116GLY 733
B
 PHE 735ASN 915
B
 ASP 917ILE 1081
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 7AIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
120 133Right-handed alpha
Helix 2
AA2
A
134 177Right-handed alpha
Helix 3
AA3
A
185 227Right-handed alpha
Helix 4
AA4
A
245 269Right-handed alpha
Helix 5
AA5
A
269 301Right-handed alpha
Helix 6
AA6
A
336 343Right-handed alpha
Helix 7
AA7
A
354 360Right-handed alpha
Helix 8
AA8
A
374 379Right-handed alpha
Helix 9
AA9
A
407 411Right-handed 310
Helix 10
AB1
A
419 428Right-handed alpha
Helix 11
AB2
A
429 431Right-handed 310
Helix 12
AB3
A
446 477Right-handed alpha
Helix 13
AB4
A
494 498Right-handed 310
Helix 14
AB5
A
504 536Right-handed alpha
Helix 15
AB6
A
543 547Right-handed 310
Helix 16
AB7
A
557 570Right-handed alpha
Helix 17
AB8
A
573 602Right-handed alpha
Helix 18
AB9
A
615 634Right-handed alpha
Helix 19
AC1
A
634 661Right-handed alpha
Helix 20
AC2
A
664 682Right-handed alpha
Helix 21
AC3
A
709 720Right-handed alpha
Helix 22
AC4
A
734 738Right-handed 310
Helix 23
AC5
A
739 756Right-handed alpha
Helix 24
AC6
A
769 780Right-handed alpha
Helix 25
AC7
A
805 820Right-handed alpha
Helix 26
AC8
A
830 834Right-handed 310
Helix 27
AC9
A
854 867Right-handed alpha
Helix 28
AD1
A
868 872Right-handed 310
Helix 29
AD2
A
888 903Right-handed alpha
Helix 30
AD3
A
918 926Right-handed alpha
Helix 31
AD4
A
1015 1033Right-handed alpha
Helix 32
AD5
A
1052 1064Right-handed alpha
Helix 33
AD6
B
120 133Right-handed alpha
Helix 34
AD7
B
134 177Right-handed alpha
Helix 35
AD8
B
185 227Right-handed alpha
Helix 36
AD9
B
245 269Right-handed alpha
Helix 37
AE1
B
269 301Right-handed alpha
Helix 38
AE2
B
336 343Right-handed alpha
Helix 39
AE3
B
354 360Right-handed alpha
Helix 40
AE4
B
374 379Right-handed alpha
Helix 41
AE5
B
407 411Right-handed 310
Helix 42
AE6
B
419 428Right-handed alpha
Helix 43
AE7
B
429 431Right-handed 310
Helix 44
AE8
B
446 477Right-handed alpha
Helix 45
AE9
B
494 498Right-handed 310
Helix 46
AF1
B
504 536Right-handed alpha
Helix 47
AF2
B
543 547Right-handed 310
Helix 48
AF3
B
557 570Right-handed alpha
Helix 49
AF4
B
573 602Right-handed alpha
Helix 50
AF5
B
615 634Right-handed alpha
Helix 51
AF6
B
634 661Right-handed alpha
Helix 52
AF7
B
664 682Right-handed alpha
Helix 53
AF8
B
709 720Right-handed alpha
Helix 54
AF9
B
734 738Right-handed 310
Helix 55
AG1
B
739 756Right-handed alpha
Helix 56
AG2
B
769 780Right-handed alpha
Helix 57
AG3
B
805 820Right-handed alpha
Helix 58
AG4
B
830 834Right-handed 310
Helix 59
AG5
B
854 867Right-handed alpha
Helix 60
AG6
B
868 872Right-handed 310
Helix 61
AG7
B
888 903Right-handed alpha
Helix 62
AG8
B
918 926Right-handed alpha
Helix 63
AG9
B
1015 1033Right-handed alpha
Helix 64
AH1
B
1052 1064Right-handed alpha
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There are 8 sheets in PDB entry 7AIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
306 310anti-parallel
Strand 3
A
363 366anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
332 335anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
761 767first strand
Strand 2
A
725 732parallel
Strand 3
A
694 697parallel
Strand 4
A
790 792parallel
Strand 5
A
824 829parallel
Strand 6
A
1070 1074anti-parallel
Strand 7
A
1039 1042parallel
Strand 8
A
845 848parallel
Strand 9
A
875 880parallel
Strand 10
A
907 910parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
782 783first strand
Strand 2
A
786 787anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
306 310anti-parallel
Strand 3
B
363 366anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
332 335anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
761 767first strand
Strand 2
B
725 732parallel
Strand 3
B
694 697parallel
Strand 4
B
790 792parallel
Strand 5
B
824 829parallel
Strand 6
B
1070 1074anti-parallel
Strand 7
B
1039 1042parallel
Strand 8
B
845 848parallel
Strand 9
B
875 880parallel
Strand 10
B
907 910parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
782 783first strand
Strand 2
B
786 787anti-parallel
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