Analysis of interatomic Contacts of Structural Units in PDB entry:
7AJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AJ9 entry

There are 2 chains in PDB entry 7AJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 22ASN 513
B
 ILE 30LEU 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 7AJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 40Right-handed alpha
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
61 79Right-handed alpha
Helix 4
AA4
A
81 97Right-handed alpha
Helix 5
AA5
A
99 125Right-handed alpha
Helix 6
AA6
A
125 131Right-handed alpha
Helix 7
AA7
A
142 155Right-handed alpha
Helix 8
AA8
A
157 165Right-handed alpha
Helix 9
AA9
A
169 185Right-handed alpha
Helix 10
AB1
A
208 219Right-handed alpha
Helix 11
AB2
A
234 248Right-handed alpha
Helix 12
AB3
A
257 265Right-handed alpha
Helix 13
AB4
A
267 282Right-handed alpha
Helix 14
AB5
A
283 285Right-handed 310
Helix 15
AB6
A
344 351Right-handed alpha
Helix 16
AB7
A
351 359Right-handed alpha
Helix 17
AB8
A
361 366Right-handed alpha
Helix 18
AB9
A
429 435Right-handed 310
Helix 19
AC1
A
449 460Right-handed alpha
Helix 20
AC2
B
35 40Right-handed alpha
Helix 21
AC3
B
42 51Right-handed alpha
Helix 22
AC4
B
61 79Right-handed alpha
Helix 23
AC5
B
81 97Right-handed alpha
Helix 24
AC6
B
99 125Right-handed alpha
Helix 25
AC7
B
125 130Right-handed alpha
Helix 26
AC8
B
142 155Right-handed alpha
Helix 27
AC9
B
157 165Right-handed alpha
Helix 28
AD1
B
169 185Right-handed alpha
Helix 29
AD2
B
208 219Right-handed alpha
Helix 30
AD3
B
234 248Right-handed alpha
Helix 31
AD4
B
257 265Right-handed alpha
Helix 32
AD5
B
267 282Right-handed alpha
Helix 33
AD6
B
283 285Right-handed 310
Helix 34
AD7
B
344 351Right-handed alpha
Helix 35
AD8
B
351 359Right-handed alpha
Helix 36
AD9
B
361 366Right-handed alpha
Helix 37
AE1
B
381 385Right-handed 310
Helix 38
AE2
B
429 435Right-handed 310
Helix 39
AE3
B
449 460Right-handed alpha
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There are 6 sheets in PDB entry 7AJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
309 319parallel
Strand 3
A
445 447anti-parallel
Strand 4
A
424 425parallel
Strand 5
A
412 415anti-parallel
Strand 6
A
328 337anti-parallel
Strand 7
A
473 486anti-parallel
Strand 8
A
292 296parallel
Strand 9
A
301 306anti-parallel
Strand 10
A
309 319anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
398 401anti-parallel
Strand 3
A
368 371anti-parallel
Strand 4
A
379 380anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 493first strand
Strand 2
A
496 499anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 441first strand
Strand 2
B
310 319parallel
Strand 3
B
445 447anti-parallel
Strand 4
B
424 425parallel
Strand 5
B
412 415anti-parallel
Strand 6
B
328 337anti-parallel
Strand 7
B
473 486anti-parallel
Strand 8
B
292 296parallel
Strand 9
B
301 305anti-parallel
Strand 10
B
310 319anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
398 401anti-parallel
Strand 3
B
368 371anti-parallel
Strand 4
B
379 380anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
490 493first strand
Strand 2
B
496 499anti-parallel
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