Analysis of interatomic Contacts of Structural Units in PDB entry:
7AJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AJO entry

There is 1 chain in PDB entry 7AJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 23GLY 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7AJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed 310
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
61 79Right-handed alpha
Helix 4
AA4
A
81 97Right-handed alpha
Helix 5
AA5
A
99 125Right-handed alpha
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
142 156Right-handed alpha
Helix 8
AA8
A
157 165Right-handed alpha
Helix 9
AA9
A
169 184Right-handed alpha
Helix 10
AB1
A
208 219Right-handed alpha
Helix 11
AB2
A
234 236Right-handed 310
Helix 12
AB3
A
237 248Right-handed alpha
Helix 13
AB4
A
257 265Right-handed alpha
Helix 14
AB5
A
267 282Right-handed alpha
Helix 15
AB6
A
283 285Right-handed 310
Helix 16
AB7
A
344 351Right-handed alpha
Helix 17
AB8
A
351 359Right-handed alpha
Helix 18
AB9
A
361 366Right-handed alpha
Helix 19
AC1
A
381 385Right-handed 310
Helix 20
AC2
A
386 390Right-handed 310
Helix 21
AC3
A
391 395Right-handed 310
Helix 22
AC4
A
429 435Right-handed 310
Helix 23
AC5
A
449 461Right-handed alpha
Helix 24
AC6
A
507 512Right-handed alpha
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There are 3 sheets in PDB entry 7AJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
309 319parallel
Strand 3
A
445 447anti-parallel
Strand 4
A
424 425parallel
Strand 5
A
412 415anti-parallel
Strand 6
A
328 337anti-parallel
Strand 7
A
473 486anti-parallel
Strand 8
A
291 296parallel
Strand 9
A
301 306anti-parallel
Strand 10
A
309 319anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
398 401anti-parallel
Strand 3
A
368 373anti-parallel
Strand 4
A
376 380anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 493first strand
Strand 2
A
496 499anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il