Analysis of interatomic Contacts of Structural Units in PDB entry:
7AJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AJP entry

There are 7 chains in PDB entry 7AJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 177	GLU 362
B	LYS 179	GLU 362
C	GLU 177	GLU 362
D	ASP 178	GLU 362
E	GLU 177	GLU 362
F	LYS 179	GLU 362
G	LYS 179	ARG 301

There are 46 helices in PDB entry 7AJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	279	283	Right-handed 310
Helix 2	AA2	A	299	301	Right-handed 310
Helix 3	AA3	A	311	313	Right-handed 310
Helix 4	AA4	B	259	261	Right-handed 310
Helix 5	AA5	B	279	283	Right-handed 310
Helix 6	AA6	B	299	301	Right-handed 310
Helix 7	AA7	B	311	313	Right-handed 310
Helix 8	AA8	C	259	263	Right-handed 310
Helix 9	AA9	C	279	283	Right-handed 310
Helix 10	AB1	C	299	301	Right-handed 310
Helix 11	AB2	C	311	313	Right-handed 310
Helix 12	AB3	D	279	283	Right-handed 310
Helix 13	AB4	D	299	301	Right-handed 310
Helix 14	AB5	D	311	313	Right-handed 310
Helix 15	AB6	E	259	263	Right-handed 310
Helix 16	AB7	E	279	283	Right-handed 310
Helix 17	AB8	E	299	301	Right-handed 310
Helix 18	AB9	E	311	313	Right-handed 310
Helix 19	AC1	F	259	261	Right-handed 310
Helix 20	AC2	F	279	283	Right-handed 310
Helix 21	AC3	F	299	301	Right-handed 310
Helix 22	AC4	F	311	313	Right-handed 310
Helix 23	AC5	G	259	261	Right-handed 310
Helix 24	AC6	G	279	283	Right-handed 310
Helix 25	AC7	G	299	301	Right-handed 310
Helix 26	AC8	G	311	313	Right-handed 310
Helix 27	AC9	H	259	261	Right-handed 310
Helix 28	AD1	H	279	283	Right-handed 310
Helix 29	AD2	H	299	301	Right-handed 310
Helix 30	AD3	H	311	313	Right-handed 310
Helix 31	AD4	I	259	261	Right-handed 310
Helix 32	AD5	I	279	283	Right-handed 310
Helix 33	AD6	I	299	301	Right-handed 310
Helix 34	AD7	I	311	313	Right-handed 310
Helix 35	AD8	J	259	263	Right-handed 310
Helix 36	AD9	J	279	283	Right-handed 310
Helix 37	AE1	J	299	301	Right-handed 310
Helix 38	AE2	J	311	313	Right-handed 310
Helix 39	AE3	K	259	263	Right-handed 310
Helix 40	AE4	K	279	283	Right-handed 310
Helix 41	AE5	K	299	301	Right-handed 310
Helix 42	AE6	K	311	313	Right-handed 310
Helix 43	AE7	L	259	263	Right-handed 310
Helix 44	AE8	L	279	283	Right-handed 310
Helix 45	AE9	L	299	301	Right-handed 310
Helix 46	AF1	L	311	313	Right-handed 310

There are 36 sheets in PDB entry 7AJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	264	267	anti-parallel
Strand 3	A	178	183	anti-parallel
Strand 4	A	200	209	anti-parallel
Strand 5	A	212	221	anti-parallel
Strand 6	A	354	359	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	345	348	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	246	first strand
Strand 2	A	332	339	anti-parallel
Strand 3	A	317	324	anti-parallel
Strand 4	A	303	309	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	263	267	anti-parallel
Strand 3	B	181	184	anti-parallel
Strand 4	B	200	209	anti-parallel
Strand 5	B	212	221	anti-parallel
Strand 6	B	354	359	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	230	first strand
Strand 2	B	345	348	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	246	first strand
Strand 2	B	332	339	anti-parallel
Strand 3	B	317	324	anti-parallel
Strand 4	B	303	309	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	264	267	anti-parallel
Strand 3	C	178	183	anti-parallel
Strand 4	C	200	209	anti-parallel
Strand 5	C	212	221	anti-parallel
Strand 6	C	354	359	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	345	348	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	246	first strand
Strand 2	C	332	339	anti-parallel
Strand 3	C	317	324	anti-parallel
Strand 4	C	303	309	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	271	first strand
Strand 2	D	264	267	anti-parallel
Strand 3	D	181	183	anti-parallel
Strand 4	D	200	209	anti-parallel
Strand 5	D	212	221	anti-parallel
Strand 6	D	354	359	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	230	first strand
Strand 2	D	345	348	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	246	first strand
Strand 2	D	332	339	anti-parallel
Strand 3	D	317	324	anti-parallel
Strand 4	D	303	309	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	271	first strand
Strand 2	E	264	267	anti-parallel
Strand 3	E	178	183	anti-parallel
Strand 4	E	200	209	anti-parallel
Strand 5	E	212	221	anti-parallel
Strand 6	E	354	359	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	228	230	first strand
Strand 2	E	345	348	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	246	first strand
Strand 2	E	332	339	anti-parallel
Strand 3	E	317	324	anti-parallel
Strand 4	E	303	309	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	271	first strand
Strand 2	F	263	267	anti-parallel
Strand 3	F	181	184	anti-parallel
Strand 4	F	200	209	anti-parallel
Strand 5	F	212	221	anti-parallel
Strand 6	F	354	359	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	228	230	first strand
Strand 2	F	345	348	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	246	first strand
Strand 2	F	332	339	anti-parallel
Strand 3	F	317	324	anti-parallel
Strand 4	F	303	309	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	270	271	first strand
Strand 2	G	263	267	anti-parallel
Strand 3	G	181	184	anti-parallel
Strand 4	G	200	209	anti-parallel
Strand 5	G	212	221	anti-parallel
Strand 6	G	354	359	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	228	230	first strand
Strand 2	G	345	348	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	246	first strand
Strand 2	G	332	339	anti-parallel
Strand 3	G	317	324	anti-parallel
Strand 4	G	303	309	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	270	271	first strand
Strand 2	H	263	267	anti-parallel
Strand 3	H	181	184	anti-parallel
Strand 4	H	200	209	anti-parallel
Strand 5	H	212	221	anti-parallel
Strand 6	H	354	359	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	228	230	first strand
Strand 2	H	345	348	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	239	246	first strand
Strand 2	H	332	339	anti-parallel
Strand 3	H	317	324	anti-parallel
Strand 4	H	303	309	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	270	271	first strand
Strand 2	I	263	267	anti-parallel
Strand 3	I	178	184	anti-parallel
Strand 4	I	200	209	anti-parallel
Strand 5	I	212	221	anti-parallel
Strand 6	I	354	359	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	228	230	first strand
Strand 2	I	345	348	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	239	246	first strand
Strand 2	I	332	339	anti-parallel
Strand 3	I	317	324	anti-parallel
Strand 4	I	303	309	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	270	271	first strand
Strand 2	J	264	267	anti-parallel
Strand 3	J	181	183	anti-parallel
Strand 4	J	200	209	anti-parallel
Strand 5	J	212	221	anti-parallel
Strand 6	J	354	359	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	228	230	first strand
Strand 2	J	345	348	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	239	246	first strand
Strand 2	J	332	339	anti-parallel
Strand 3	J	317	324	anti-parallel
Strand 4	J	303	309	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	270	271	first strand
Strand 2	K	264	267	anti-parallel
Strand 3	K	178	183	anti-parallel
Strand 4	K	200	209	anti-parallel
Strand 5	K	212	221	anti-parallel
Strand 6	K	354	359	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	228	230	first strand
Strand 2	K	345	348	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	239	246	first strand
Strand 2	K	332	339	anti-parallel
Strand 3	K	317	324	anti-parallel
Strand 4	K	303	309	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	270	271	first strand
Strand 2	L	264	267	anti-parallel
Strand 3	L	181	183	anti-parallel
Strand 4	L	200	209	anti-parallel
Strand 5	L	212	221	anti-parallel
Strand 6	L	354	359	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	228	230	first strand
Strand 2	L	345	348	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	239	246	first strand
Strand 2	L	332	339	anti-parallel
Strand 3	L	317	324	anti-parallel
Strand 4	L	303	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AJP