Analysis of interatomic Contacts of Structural Units in PDB entry:
7AK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AK0 entry

There are 2 chains in PDB entry 7AK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 337GLY 722
B
 ASP 336HIS 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 7AK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
360 376Right-handed alpha
Helix 2
AA2
A
387 400Right-handed alpha
Helix 3
AA3
A
435 439Right-handed 310
Helix 4
AA4
A
442 451Right-handed alpha
Helix 5
AA5
A
509 517Right-handed alpha
Helix 6
AA6
A
524 539Right-handed alpha
Helix 7
AA7
A
570 584Right-handed alpha
Helix 8
AA8
A
636 640Right-handed 310
Helix 9
AA9
A
642 646Right-handed 310
Helix 10
AB1
A
651 655Right-handed 310
Helix 11
AB2
A
659 663Right-handed 310
Helix 12
AB3
A
674 678Right-handed 310
Helix 13
AB4
A
710 716Right-handed 310
Helix 14
AB5
B
360 376Right-handed alpha
Helix 15
AB6
B
387 400Right-handed alpha
Helix 16
AB7
B
435 439Right-handed 310
Helix 17
AB8
B
442 451Right-handed alpha
Helix 18
AB9
B
509 517Right-handed alpha
Helix 19
AC1
B
524 539Right-handed alpha
Helix 20
AC2
B
570 584Right-handed alpha
Helix 21
AC3
B
636 640Right-handed 310
Helix 22
AC4
B
642 646Right-handed 310
Helix 23
AC5
B
651 655Right-handed 310
Helix 24
AC6
B
659 663Right-handed 310
Helix 25
AC7
B
674 678Right-handed 310
Helix 26
AC8
B
710 716Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7AK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 384first strand
Strand 2
A
343 349parallel
Strand 3
A
407 419parallel
Strand 4
A
456 464parallel
Strand 5
A
486 493parallel
Strand 6
A
547 552anti-parallel
Strand 7
B
546 552anti-parallel
Strand 8
B
486 493anti-parallel
Strand 9
B
456 464parallel
Strand 10
B
407 419parallel
Strand 11
B
343 349parallel
Strand 12
B
379 384parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
422 425anti-parallel
Strand 3
A
407 419anti-parallel
Strand 4
A
456 464parallel
Strand 5
A
486 493parallel
Strand 6
A
547 552anti-parallel
Strand 7
B
546 552anti-parallel
Strand 8
B
486 493anti-parallel
Strand 9
B
456 464parallel
Strand 10
B
407 419parallel
Strand 11
B
422 425anti-parallel
Strand 12
B
440 441anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 593first strand
Strand 2
A
599 608anti-parallel
Strand 3
A
611 620anti-parallel
Strand 4
A
668 672anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 633first strand
Strand 2
A
683 692anti-parallel
Strand 3
A
699 706anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 593first strand
Strand 2
B
599 608anti-parallel
Strand 3
B
611 620anti-parallel
Strand 4
B
668 672anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
625 633first strand
Strand 2
B
683 692anti-parallel
Strand 3
B
699 706anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il