Analysis of interatomic Contacts of Structural Units in PDB entry:
7AKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AKP entry

There is 1 chain in PDB entry 7AKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7ARG 751
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7AKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 15Right-handed alpha
Helix 2
AA2
A
16 18Right-handed 310
Helix 3
AA3
A
20 33Right-handed alpha
Helix 4
AA4
A
39 67Right-handed alpha
Helix 5
AA5
A
82 92Right-handed alpha
Helix 6
AA6
A
104 118Right-handed alpha
Helix 7
AA7
A
131 146Right-handed alpha
Helix 8
AA8
A
175 181Right-handed alpha
Helix 9
AA9
A
198 202Right-handed 310
Helix 10
AB1
A
203 220Right-handed alpha
Helix 11
AB2
A
234 241Right-handed alpha
Helix 12
AB3
A
275 289Right-handed alpha
Helix 13
AB4
A
300 314Right-handed alpha
Helix 14
AB5
A
328 333Right-handed alpha
Helix 15
AB6
A
389 398Right-handed alpha
Helix 16
AB7
A
413 419Right-handed alpha
Helix 17
AB8
A
426 430Right-handed 310
Helix 18
AB9
A
432 443Right-handed alpha
Helix 19
AC1
A
447 451Right-handed 310
Helix 20
AC2
A
459 472Right-handed alpha
Helix 21
AC3
A
487 496Right-handed alpha
Helix 22
AC4
A
499 510Right-handed alpha
Helix 23
AC5
A
514 526Right-handed alpha
Helix 24
AC6
A
538 546Right-handed alpha
Helix 25
AC7
A
547 549Right-handed 310
Helix 26
AC8
A
555 570Right-handed alpha
Helix 27
AC9
A
573 584Right-handed alpha
Helix 28
AD1
A
587 608Right-handed alpha
Helix 29
AD2
A
618 628Right-handed alpha
Helix 30
AD3
A
647 649Right-handed 310
Helix 31
AD4
A
688 696Right-handed 310
Helix 32
AD5
A
736 741Right-handed alpha
Helix 33
AD6
A
742 750Right-handed alpha
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There are 7 sheets in PDB entry 7AKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
170 174parallel
Strand 3
A
124 129parallel
Strand 4
A
191 196parallel
Strand 5
A
224 229parallel
Strand 6
A
95 100parallel
Strand 7
A
246 249parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
406 410parallel
Strand 3
A
362 365parallel
Strand 4
A
293 296parallel
Strand 5
A
344 347parallel
Strand 6
A
320 322parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
385 387anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
380 382anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
485 486anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 637first strand
Strand 2
A
644 645anti-parallel
Strand 3
A
651 654anti-parallel
Strand 4
A
679 686parallel
Strand 5
A
667 675anti-parallel
Strand 6
A
634 637anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 710first strand
Strand 2
A
715 724anti-parallel
Strand 3
A
727 734anti-parallel
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