Analysis of interatomic Contacts of Structural Units in PDB entry:
7AL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AL5 entry

There are 4 chains in PDB entry 7AL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ARG 286
B
 SER 2ARG 286
C
 SER 2ARG 286
D
 VAL 5ARG 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 7AL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 44Right-handed 310
Helix 2
AA2
A
46 50Right-handed 310
Helix 3
AA3
A
76 91Right-handed alpha
Helix 4
AA4
A
102 115Right-handed alpha
Helix 5
AA5
A
134 136Right-handed 310
Helix 6
AA6
A
137 151Right-handed alpha
Helix 7
AA7
A
152 155Right-handed 310
Helix 8
AA8
A
162 172Right-handed alpha
Helix 9
AA9
A
178 189Right-handed alpha
Helix 10
AB1
A
202 207Right-handed 310
Helix 11
AB2
A
214 224Right-handed alpha
Helix 12
AB3
A
237 242Right-handed alpha
Helix 13
AB4
A
244 250Right-handed alpha
Helix 14
AB5
A
264 269Right-handed alpha
Helix 15
AB6
A
269 286Right-handed alpha
Helix 16
AB7
B
39 44Right-handed 310
Helix 17
AB8
B
46 50Right-handed 310
Helix 18
AB9
B
76 91Right-handed alpha
Helix 19
AC1
B
102 115Right-handed alpha
Helix 20
AC2
B
134 136Right-handed 310
Helix 21
AC3
B
137 153Right-handed alpha
Helix 22
AC4
B
162 172Right-handed alpha
Helix 23
AC5
B
178 189Right-handed alpha
Helix 24
AC6
B
202 207Right-handed 310
Helix 25
AC7
B
214 223Right-handed alpha
Helix 26
AC8
B
237 242Right-handed alpha
Helix 27
AC9
B
242 251Right-handed alpha
Helix 28
AD1
B
264 269Right-handed alpha
Helix 29
AD2
B
269 286Right-handed alpha
Helix 30
AD3
C
39 44Right-handed 310
Helix 31
AD4
C
45 50Right-handed alpha
Helix 32
AD5
C
76 91Right-handed alpha
Helix 33
AD6
C
102 115Right-handed alpha
Helix 34
AD7
C
137 151Right-handed alpha
Helix 35
AD8
C
152 155Right-handed 310
Helix 36
AD9
C
162 172Right-handed alpha
Helix 37
AE1
C
178 189Right-handed alpha
Helix 38
AE2
C
202 207Right-handed 310
Helix 39
AE3
C
214 223Right-handed alpha
Helix 40
AE4
C
238 241Right-handed 310
Helix 41
AE5
C
242 250Right-handed alpha
Helix 42
AE6
C
264 269Right-handed alpha
Helix 43
AE7
C
269 285Right-handed alpha
Helix 44
AE8
D
39 44Right-handed 310
Helix 45
AE9
D
46 50Right-handed 310
Helix 46
AF1
D
76 91Right-handed alpha
Helix 47
AF2
D
102 115Right-handed alpha
Helix 48
AF3
D
134 136Right-handed 310
Helix 49
AF4
D
137 151Right-handed alpha
Helix 50
AF5
D
152 155Right-handed 310
Helix 51
AF6
D
162 172Right-handed alpha
Helix 52
AF7
D
178 189Right-handed alpha
Helix 53
AF8
D
202 207Right-handed 310
Helix 54
AF9
D
214 225Right-handed alpha
Helix 55
AG1
D
237 242Right-handed alpha
Helix 56
AG2
D
243 251Right-handed alpha
Helix 57
AG3
D
264 269Right-handed alpha
Helix 58
AG4
D
269 286Right-handed alpha
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There are 8 sheets in PDB entry 7AL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
16 22anti-parallel
Strand 3
A
53 58anti-parallel
Strand 4
A
28 33parallel
Strand 5
A
96 101parallel
Strand 6
A
119 125parallel
Strand 7
A
229 234parallel
Strand 8
A
255 259parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
196 199anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
28 33parallel
Strand 5
B
96 101parallel
Strand 6
B
119 125parallel
Strand 7
B
229 234parallel
Strand 8
B
255 259parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
196 199anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 12first strand
Strand 2
C
15 22anti-parallel
Strand 3
C
53 58anti-parallel
Strand 4
C
28 33parallel
Strand 5
C
96 101parallel
Strand 6
C
119 125parallel
Strand 7
C
229 234parallel
Strand 8
C
255 259parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 192first strand
Strand 2
C
197 199anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 12first strand
Strand 2
D
15 22anti-parallel
Strand 3
D
53 58anti-parallel
Strand 4
D
28 33parallel
Strand 5
D
96 101parallel
Strand 6
D
119 125parallel
Strand 7
D
229 234parallel
Strand 8
D
255 259parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
190 192first strand
Strand 2
D
197 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il