Analysis of interatomic Contacts of Structural Units in PDB entry:
7ALV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ALV entry

There is 1 chain in PDB entry 7ALV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 134VAL 676
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7ALV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
134 148Right-handed alpha
Helix 2
AA2
A
164 168Right-handed 310
Helix 3
AA3
A
204 208Right-handed 310
Helix 4
AA4
A
231 245Right-handed alpha
Helix 5
AA5
A
262 264Right-handed 310
Helix 6
AA6
A
271 279Right-handed alpha
Helix 7
AA7
A
286 291Right-handed alpha
Helix 8
AA8
A
293 295Right-handed 310
Helix 9
AA9
A
304 307Right-handed 310
Helix 10
AB1
A
328 337Right-handed alpha
Helix 11
AB2
A
351 353Right-handed 310
Helix 12
AB3
A
354 360Right-handed alpha
Helix 13
AB4
A
374 386Right-handed alpha
Helix 14
AB5
A
388 402Right-handed alpha
Helix 15
AB6
A
402 409Right-handed alpha
Helix 16
AB7
A
411 428Right-handed alpha
Helix 17
AB8
A
438 450Right-handed alpha
Helix 18
AB9
A
465 479Right-handed alpha
Helix 19
AC1
A
486 492Right-handed alpha
Helix 20
AC2
A
501 507Right-handed alpha
Helix 21
AC3
A
522 535Right-handed alpha
Helix 22
AC4
A
557 564Right-handed alpha
Helix 23
AC5
A
573 585Right-handed alpha
Helix 24
AC6
A
590 594Right-handed 310
Helix 25
AC7
A
597 617Right-handed alpha
Helix 26
AC8
A
626 637Right-handed alpha
Helix 27
AC9
A
639 648Right-handed alpha
Helix 28
AD1
A
659 672Right-handed alpha
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There are 3 sheets in PDB entry 7ALV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
365 372anti-parallel
Strand 3
A
221 225parallel
Strand 4
A
345 350parallel
Strand 5
A
297 302parallel
Strand 6
A
255 260parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
326 327anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 485first strand
Strand 2
A
517 520anti-parallel
Strand 3
A
508 510anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il