Analysis of interatomic Contacts of Structural Units in PDB entry:
7ALZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ALZ entry

There are 2 chains in PDB entry 7ALZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3PRO 281
B
 GLY 3PRO 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7ALZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
35 45Right-handed alpha
Helix 3
AA3
A
68 73Right-handed alpha
Helix 4
AA4
A
206 219Right-handed alpha
Helix 5
AA5
A
251 262Right-handed alpha
Helix 6
AA6
A
275 280Right-handed 310
Helix 7
AA7
B
15 25Right-handed alpha
Helix 8
AA8
B
35 45Right-handed alpha
Helix 9
AA9
B
68 73Right-handed alpha
Helix 10
AB1
B
206 218Right-handed alpha
Helix 11
AB2
B
251 260Right-handed alpha
Helix 12
AB3
B
261 263Right-handed 310
Helix 13
AB4
B
275 279Right-handed 310
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There are 5 sheets in PDB entry 7ALZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
6 10parallel
Strand 3
A
50 57parallel
Strand 4
A
173 181anti-parallel
Strand 5
A
75 84anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
B
62 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 230first strand
Strand 2
A
233 244anti-parallel
Strand 3
A
193 202anti-parallel
Strand 4
A
264 273anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
6 10parallel
Strand 3
B
50 57parallel
Strand 4
B
173 181anti-parallel
Strand 5
B
75 84anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 230first strand
Strand 2
B
233 244anti-parallel
Strand 3
B
193 202anti-parallel
Strand 4
B
264 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il