Analysis of interatomic Contacts of Structural Units in PDB entry:
7AM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AM0 entry

There are 4 chains in PDB entry 7AM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	PRO 281
B	GLU 4	PRO 281
C	ARG 5	ARG 279
D	GLU 4	PRO 281

There are 38 helices in PDB entry 7AM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	25	Right-handed alpha
Helix 2	AA2	A	35	45	Right-handed alpha
Helix 3	AA3	A	68	73	Right-handed alpha
Helix 4	AA4	A	106	113	Right-handed alpha
Helix 5	AA5	A	113	121	Right-handed alpha
Helix 6	AA6	A	129	140	Right-handed alpha
Helix 7	AA7	A	150	158	Right-handed alpha
Helix 8	AA8	A	206	218	Right-handed alpha
Helix 9	AA9	A	251	262	Right-handed alpha
Helix 10	AB1	A	275	280	Right-handed 310
Helix 11	AB2	B	15	25	Right-handed alpha
Helix 12	AB3	B	35	45	Right-handed alpha
Helix 13	AB4	B	65	70	Right-handed alpha
Helix 14	AB5	B	106	113	Right-handed alpha
Helix 15	AB6	B	113	121	Right-handed alpha
Helix 16	AB7	B	129	141	Right-handed alpha
Helix 17	AB8	B	150	158	Right-handed alpha
Helix 18	AB9	B	206	218	Right-handed alpha
Helix 19	AC1	B	251	262	Right-handed alpha
Helix 20	AC2	B	275	280	Right-handed 310
Helix 21	AC3	C	15	23	Right-handed alpha
Helix 22	AC4	C	35	45	Right-handed alpha
Helix 23	AC5	C	106	113	Right-handed alpha
Helix 24	AC6	C	113	121	Right-handed alpha
Helix 25	AC7	C	129	141	Right-handed alpha
Helix 26	AC8	C	150	157	Right-handed alpha
Helix 27	AC9	C	206	218	Right-handed alpha
Helix 28	AD1	C	251	262	Right-handed alpha
Helix 29	AD2	D	15	25	Right-handed alpha
Helix 30	AD3	D	35	45	Right-handed alpha
Helix 31	AD4	D	65	70	Right-handed alpha
Helix 32	AD5	D	106	113	Right-handed alpha
Helix 33	AD6	D	113	119	Right-handed alpha
Helix 34	AD7	D	129	141	Right-handed alpha
Helix 35	AD8	D	150	158	Right-handed alpha
Helix 36	AD9	D	206	218	Right-handed alpha
Helix 37	AE1	D	251	262	Right-handed alpha
Helix 38	AE2	D	275	280	Right-handed 310

There are 13 sheets in PDB entry 7AM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	6	10	parallel
Strand 3	A	50	57	parallel
Strand 4	A	173	181	anti-parallel
Strand 5	A	75	84	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	B	62	64	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	126	first strand
Strand 2	A	102	105	parallel
Strand 3	A	145	149	parallel
Strand 4	A	88	91	anti-parallel
Strand 5	A	160	163	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	228	first strand
Strand 2	A	236	244	anti-parallel
Strand 3	A	193	202	anti-parallel
Strand 4	A	264	273	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	6	10	parallel
Strand 3	B	50	57	parallel
Strand 4	B	173	181	anti-parallel
Strand 5	B	75	84	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	126	first strand
Strand 2	B	102	105	parallel
Strand 3	B	145	149	parallel
Strand 4	B	88	91	anti-parallel
Strand 5	B	160	163	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	230	first strand
Strand 2	B	233	244	anti-parallel
Strand 3	B	193	202	anti-parallel
Strand 4	B	264	273	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	6	10	parallel
Strand 3	C	50	57	parallel
Strand 4	C	173	181	anti-parallel
Strand 5	C	75	84	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	126	first strand
Strand 2	C	102	105	parallel
Strand 3	C	145	149	parallel
Strand 4	C	88	91	anti-parallel
Strand 5	C	160	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	230	first strand
Strand 2	C	233	244	anti-parallel
Strand 3	C	193	202	anti-parallel
Strand 4	C	264	273	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	33	first strand
Strand 2	D	6	10	parallel
Strand 3	D	50	57	parallel
Strand 4	D	173	180	anti-parallel
Strand 5	D	76	84	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	126	first strand
Strand 2	D	102	105	parallel
Strand 3	D	145	149	parallel
Strand 4	D	88	91	anti-parallel
Strand 5	D	160	163	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	228	first strand
Strand 2	D	236	244	anti-parallel
Strand 3	D	193	202	anti-parallel
Strand 4	D	264	273	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AM0