Analysis of interatomic Contacts of Structural Units in PDB entry:
7AM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AM1 entry

There is 1 chain in PDB entry 7AM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 336	ASP 1106

There are 58 helices in PDB entry 7AM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	346	348	Right-handed 310
Helix 2	AA2	A	349	356	Right-handed alpha
Helix 3	AA3	A	390	395	Right-handed alpha
Helix 4	AA4	A	409	414	Right-handed alpha
Helix 5	AA5	A	508	521	Right-handed alpha
Helix 6	AA6	A	602	606	Right-handed 310
Helix 7	AA7	A	608	613	Right-handed 310
Helix 8	AA8	A	644	656	Right-handed alpha
Helix 9	AA9	A	682	689	Right-handed alpha
Helix 10	AB1	A	733	737	Right-handed 310
Helix 11	AB2	A	741	751	Right-handed alpha
Helix 12	AB3	A	765	773	Right-handed alpha
Helix 13	AB4	A	814	823	Right-handed alpha
Helix 14	AB5	A	828	845	Right-handed alpha
Helix 15	AB6	A	856	864	Right-handed alpha
Helix 16	AB7	A	877	903	Right-handed alpha
Helix 17	AB8	A	915	930	Right-handed alpha
Helix 18	AB9	A	937	947	Right-handed alpha
Helix 19	AC1	A	950	964	Right-handed alpha
Helix 20	AC2	A	974	976	Right-handed 310
Helix 21	AC3	A	977	981	Right-handed 310
Helix 22	AC4	A	1001	1016	Right-handed alpha
Helix 23	AC5	A	1022	1060	Right-handed alpha
Helix 24	AC6	A	1096	1098	Right-handed 310
Helix 25	AC7	A	1127	1131	Right-handed 310
Helix 26	AC8	A	1135	1140	Right-handed 310
Helix 27	AC9	A	1147	1162	Right-handed alpha
Helix 28	AD1	A	1167	1177	Right-handed alpha
Helix 29	AD2	A	1195	1202	Right-handed alpha
Helix 30	AD3	B	346	348	Right-handed 310
Helix 31	AD4	B	349	356	Right-handed alpha
Helix 32	AD5	B	389	395	Right-handed alpha
Helix 33	AD6	B	409	416	Right-handed alpha
Helix 34	AD7	B	508	521	Right-handed alpha
Helix 35	AD8	B	599	601	Right-handed 310
Helix 36	AD9	B	608	613	Right-handed 310
Helix 37	AE1	B	644	656	Right-handed alpha
Helix 38	AE2	B	682	689	Right-handed alpha
Helix 39	AE3	B	733	737	Right-handed 310
Helix 40	AE4	B	741	751	Right-handed alpha
Helix 41	AE5	B	765	773	Right-handed alpha
Helix 42	AE6	B	814	823	Right-handed alpha
Helix 43	AE7	B	828	845	Right-handed alpha
Helix 44	AE8	B	856	864	Right-handed alpha
Helix 45	AE9	B	877	903	Right-handed alpha
Helix 46	AF1	B	915	930	Right-handed alpha
Helix 47	AF2	B	937	947	Right-handed alpha
Helix 48	AF3	B	950	963	Right-handed alpha
Helix 49	AF4	B	974	976	Right-handed 310
Helix 50	AF5	B	977	981	Right-handed 310
Helix 51	AF6	B	1001	1015	Right-handed alpha
Helix 52	AF7	B	1022	1060	Right-handed alpha
Helix 53	AF8	B	1096	1098	Right-handed 310
Helix 54	AF9	B	1127	1131	Right-handed 310
Helix 55	AG1	B	1135	1140	Right-handed 310
Helix 56	AG2	B	1147	1161	Right-handed alpha
Helix 57	AG3	B	1167	1177	Right-handed alpha
Helix 58	AG4	B	1195	1202	Right-handed alpha

There are 14 sheets in PDB entry 7AM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	366	first strand
Strand 2	A	373	377	anti-parallel
Strand 3	A	386	389	anti-parallel
Strand 4	A	540	548	parallel
Strand 5	A	402	407	anti-parallel
Strand 6	A	360	366	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	502	first strand
Strand 2	A	1100	1106	anti-parallel
Strand 3	A	1111	1116	anti-parallel
Strand 4	A	1212	1218	anti-parallel
Strand 5	A	1206	1209	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	560	first strand
Strand 2	A	581	586	anti-parallel
Strand 3	A	594	597	anti-parallel
Strand 4	A	632	641	parallel
Strand 5	A	615	623	anti-parallel
Strand 6	A	555	560	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	692	first strand
Strand 2	A	796	806	parallel
Strand 3	A	780	790	anti-parallel
Strand 4	A	723	731	anti-parallel
Strand 5	A	712	718	anti-parallel
Strand 6	A	701	704	anti-parallel
Strand 7	A	810	813	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	755	first strand
Strand 2	A	760	761	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	907	910	first strand
Strand 2	A	969	972	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1090	1094	first strand
Strand 2	A	1079	1083	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	1222	1230	anti-parallel
Strand 5	A	1237	1242	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	366	first strand
Strand 2	B	374	377	anti-parallel
Strand 3	B	386	388	anti-parallel
Strand 4	B	539	548	parallel
Strand 5	B	402	408	anti-parallel
Strand 6	B	360	366	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	502	first strand
Strand 2	B	1100	1106	anti-parallel
Strand 3	B	1111	1116	anti-parallel
Strand 4	B	1212	1218	anti-parallel
Strand 5	B	1206	1209	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	560	first strand
Strand 2	B	581	586	anti-parallel
Strand 3	B	594	597	anti-parallel
Strand 4	B	632	641	parallel
Strand 5	B	615	623	anti-parallel
Strand 6	B	555	560	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	692	first strand
Strand 2	B	796	806	parallel
Strand 3	B	780	790	anti-parallel
Strand 4	B	723	731	anti-parallel
Strand 5	B	712	718	anti-parallel
Strand 6	B	701	704	anti-parallel
Strand 7	B	810	813	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	754	755	first strand
Strand 2	B	760	761	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	907	910	first strand
Strand 2	B	969	972	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1090	1094	first strand
Strand 2	B	1079	1083	anti-parallel
Strand 3	B	1066	1075	anti-parallel
Strand 4	B	1222	1230	anti-parallel
Strand 5	B	1237	1242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AM1