Analysis of interatomic Contacts of Structural Units in PDB entry:
7AMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AMD entry

There is 1 chain in PDB entry 7AMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12LEU 607
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7AMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 33Right-handed alpha
Helix 2
AA2
A
34 36Right-handed 310
Helix 3
AA3
A
37 52Right-handed alpha
Helix 4
AA4
A
56 72Right-handed alpha
Helix 5
AA5
A
76 85Right-handed alpha
Helix 6
AA6
A
109 134Right-handed alpha
Helix 7
AA7
A
152 158Right-handed 310
Helix 8
AA8
A
207 223Right-handed alpha
Helix 9
AA9
A
224 228Right-handed 310
Helix 10
AB1
A
231 238Right-handed 310
Helix 11
AB2
A
239 251Right-handed alpha
Helix 12
AB3
A
253 265Right-handed alpha
Helix 13
AB4
A
281 292Right-handed alpha
Helix 14
AB5
A
328 343Right-handed alpha
Helix 15
AB6
A
370 390Right-handed alpha
Helix 16
AB7
A
402 408Right-handed alpha
Helix 17
AB8
A
412 430Right-handed alpha
Helix 18
AB9
A
456 468Right-handed alpha
Helix 19
AC1
A
474 498Right-handed alpha
Helix 20
AC2
A
502 517Right-handed alpha
Helix 21
AC3
A
521 526Right-handed alpha
Helix 22
AC4
A
526 533Right-handed alpha
Helix 23
AC5
A
585 605Right-handed alpha
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There are 3 sheets in PDB entry 7AMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
184 190anti-parallel
Strand 4
A
269 272parallel
Strand 5
A
308 312parallel
Strand 6
A
318 322anti-parallel
Strand 7
A
99 101anti-parallel
Strand 8
A
549 551anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
171 173anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 398first strand
Strand 2
A
571 578anti-parallel
Strand 3
A
560 566anti-parallel
Strand 4
A
537 541parallel
Strand 5
A
435 440parallel
Strand 6
A
449 451anti-parallel
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