Analysis of interatomic Contacts of Structural Units in PDB entry:
7AMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AMK entry

There are 2 chains in PDB entry 7AMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 23	GLN 498
B	LEU 23	GLN 498

There are 22 helices in PDB entry 7AMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	71	Right-handed 310
Helix 2	AA2	A	89	95	Right-handed alpha
Helix 3	AA3	A	121	126	Right-handed alpha
Helix 4	AA4	A	142	146	Right-handed 310
Helix 5	AA5	A	147	153	Right-handed alpha
Helix 6	AA6	A	176	183	Right-handed alpha
Helix 7	AA7	A	309	315	Right-handed alpha
Helix 8	AA8	A	414	418	Right-handed 310
Helix 9	AA9	A	435	440	Right-handed alpha
Helix 10	AB1	A	441	443	Right-handed 310
Helix 11	AB2	A	463	471	Right-handed 310
Helix 12	AB3	B	67	71	Right-handed 310
Helix 13	AB4	B	89	95	Right-handed alpha
Helix 14	AB5	B	121	126	Right-handed alpha
Helix 15	AB6	B	142	146	Right-handed 310
Helix 16	AB7	B	147	153	Right-handed alpha
Helix 17	AB8	B	176	183	Right-handed 310
Helix 18	AB9	B	309	315	Right-handed alpha
Helix 19	AC1	B	414	418	Right-handed 310
Helix 20	AC2	B	435	440	Right-handed alpha
Helix 21	AC3	B	441	443	Right-handed 310
Helix 22	AC4	B	463	471	Right-handed 310

There are 16 sheets in PDB entry 7AMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	36	first strand
Strand 2	A	128	139	parallel
Strand 3	A	105	114	anti-parallel
Strand 4	A	59	62	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	81	84	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	237	249	parallel
Strand 3	A	222	232	anti-parallel
Strand 4	A	187	192	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	208	211	anti-parallel
Strand 3	A	200	203	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	258	first strand
Strand 2	A	277	285	anti-parallel
Strand 3	A	334	343	anti-parallel
Strand 4	A	316	325	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	268	first strand
Strand 2	A	372	381	parallel
Strand 3	A	353	363	anti-parallel
Strand 4	A	301	305	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	397	first strand
Strand 2	A	488	497	parallel
Strand 3	A	473	482	anti-parallel
Strand 4	A	423	429	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	410	first strand
Strand 2	A	456	460	anti-parallel
Strand 3	A	445	449	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	36	first strand
Strand 2	B	128	139	parallel
Strand 3	B	105	114	anti-parallel
Strand 4	B	59	62	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	81	84	anti-parallel
Strand 3	B	73	75	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	237	249	parallel
Strand 3	B	222	232	anti-parallel
Strand 4	B	187	193	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	173	first strand
Strand 2	B	208	211	anti-parallel
Strand 3	B	200	203	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	258	first strand
Strand 2	B	281	285	anti-parallel
Strand 3	B	334	343	anti-parallel
Strand 4	B	316	325	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	268	first strand
Strand 2	B	372	381	parallel
Strand 3	B	353	363	anti-parallel
Strand 4	B	301	306	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	398	first strand
Strand 2	B	488	498	parallel
Strand 3	B	473	482	anti-parallel
Strand 4	B	423	429	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	410	first strand
Strand 2	B	455	460	anti-parallel
Strand 3	B	445	450	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AMK