Analysis of interatomic Contacts of Structural Units in PDB entry:
7AML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AML entry

There are 6 chains in PDB entry 7AML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 22	PRO 617
D	GLY 22	PRO 617
B	ARG 29	GLY 351
C	GLN 138	VAL 235
E	ARG 29	GLY 351
F	GLN 138	VAL 235

There are 66 helices in PDB entry 7AML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	71	Right-handed 310
Helix 2	AA2	A	89	96	Right-handed alpha
Helix 3	AA3	A	119	123	Right-handed 310
Helix 4	AA4	A	176	182	Right-handed alpha
Helix 5	AA5	A	309	315	Right-handed alpha
Helix 6	AA6	A	435	440	Right-handed alpha
Helix 7	AA7	A	441	443	Right-handed 310
Helix 8	AA8	A	469	471	Right-handed 310
Helix 9	AA9	A	519	525	Right-handed alpha
Helix 10	AB1	A	576	581	Right-handed alpha
Helix 11	AB2	D	68	71	Right-handed 310
Helix 12	AB3	D	89	96	Right-handed alpha
Helix 13	AB4	D	119	123	Right-handed 310
Helix 14	AB5	D	176	183	Right-handed alpha
Helix 15	AB6	D	309	315	Right-handed alpha
Helix 16	AB7	D	435	440	Right-handed alpha
Helix 17	AB8	D	441	443	Right-handed 310
Helix 18	AB9	D	468	471	Right-handed 310
Helix 19	AC1	D	519	525	Right-handed alpha
Helix 20	AC2	D	576	581	Right-handed alpha
Helix 21	AC3	B	32	40	Right-handed alpha
Helix 22	AC4	B	42	56	Right-handed alpha
Helix 23	AC5	B	75	85	Right-handed alpha
Helix 24	AC6	B	86	90	Right-handed 310
Helix 25	AC7	B	99	113	Right-handed alpha
Helix 26	AC8	B	128	136	Right-handed alpha
Helix 27	AC9	B	138	144	Right-handed alpha
Helix 28	AD1	B	152	161	Right-handed alpha
Helix 29	AD2	B	165	173	Right-handed alpha
Helix 30	AD3	B	174	179	Right-handed 310
Helix 31	AD4	B	188	203	Right-handed alpha
Helix 32	AD5	B	204	214	Right-handed alpha
Helix 33	AD6	B	222	230	Right-handed alpha
Helix 34	AD7	B	233	238	Right-handed alpha
Helix 35	AD8	B	245	254	Right-handed alpha
Helix 36	AD9	B	258	271	Right-handed alpha
Helix 37	AE1	B	284	294	Right-handed alpha
Helix 38	AE2	B	321	323	Right-handed 310
Helix 39	AE3	B	324	337	Right-handed alpha
Helix 40	AE4	B	338	350	Right-handed alpha
Helix 41	AE5	C	152	155	Right-handed 310
Helix 42	AE6	C	173	177	Right-handed 310
Helix 43	AE7	C	178	190	Right-handed alpha
Helix 44	AE8	E	32	40	Right-handed alpha
Helix 45	AE9	E	42	56	Right-handed alpha
Helix 46	AF1	E	75	85	Right-handed alpha
Helix 47	AF2	E	86	90	Right-handed 310
Helix 48	AF3	E	99	113	Right-handed alpha
Helix 49	AF4	E	128	136	Right-handed alpha
Helix 50	AF5	E	138	144	Right-handed alpha
Helix 51	AF6	E	152	161	Right-handed alpha
Helix 52	AF7	E	165	173	Right-handed alpha
Helix 53	AF8	E	174	179	Right-handed 310
Helix 54	AF9	E	188	203	Right-handed alpha
Helix 55	AG1	E	204	214	Right-handed alpha
Helix 56	AG2	E	222	230	Right-handed alpha
Helix 57	AG3	E	233	238	Right-handed alpha
Helix 58	AG4	E	245	254	Right-handed alpha
Helix 59	AG5	E	258	271	Right-handed alpha
Helix 60	AG6	E	284	294	Right-handed alpha
Helix 61	AG7	E	321	323	Right-handed 310
Helix 62	AG8	E	324	337	Right-handed alpha
Helix 63	AG9	E	338	350	Right-handed alpha
Helix 64	AH1	F	152	155	Right-handed 310
Helix 65	AH2	F	173	177	Right-handed 310
Helix 66	AH3	F	178	190	Right-handed alpha

There are 34 sheets in PDB entry 7AML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	129	135	parallel
Strand 3	A	105	114	anti-parallel
Strand 4	A	59	63	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	81	84	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	238	249	parallel
Strand 3	A	222	231	anti-parallel
Strand 4	A	188	192	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	173	first strand
Strand 2	A	208	211	anti-parallel
Strand 3	A	200	202	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	377	381	parallel
Strand 3	A	353	357	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	285	first strand
Strand 2	A	334	343	anti-parallel
Strand 3	A	316	320	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	285	first strand
Strand 2	A	334	343	anti-parallel
Strand 3	A	323	325	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	305	first strand
Strand 2	A	359	362	anti-parallel
Strand 3	A	372	374	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	455	457	anti-parallel
Strand 3	A	448	450	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	429	first strand
Strand 2	A	473	482	anti-parallel
Strand 3	A	488	496	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	538	first strand
Strand 2	A	553	554	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	587	first strand
Strand 2	A	610	612	parallel
Strand 3	A	604	605	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	591	first strand
Strand 2	A	596	599	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	34	first strand
Strand 2	D	129	135	parallel
Strand 3	D	105	114	anti-parallel
Strand 4	D	59	63	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	81	84	anti-parallel
Strand 3	D	73	75	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	163	first strand
Strand 2	D	238	249	parallel
Strand 3	D	222	231	anti-parallel
Strand 4	D	188	192	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	173	first strand
Strand 2	D	208	211	anti-parallel
Strand 3	D	200	202	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	265	first strand
Strand 2	D	377	381	parallel
Strand 3	D	353	357	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	285	first strand
Strand 2	D	334	343	anti-parallel
Strand 3	D	316	320	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	285	first strand
Strand 2	D	334	343	anti-parallel
Strand 3	D	323	325	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	305	first strand
Strand 2	D	359	362	anti-parallel
Strand 3	D	372	374	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	455	457	anti-parallel
Strand 3	D	448	450	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	423	429	first strand
Strand 2	D	473	482	anti-parallel
Strand 3	D	488	496	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	538	first strand
Strand 2	D	553	554	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	587	first strand
Strand 2	D	610	612	parallel
Strand 3	D	604	605	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	589	591	first strand
Strand 2	D	596	599	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	312	313	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	150	first strand
Strand 2	C	163	170	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	208	first strand
Strand 2	C	229	235	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	215	first strand
Strand 2	C	221	224	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	312	313	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	150	first strand
Strand 2	F	163	169	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	205	first strand
Strand 2	F	232	235	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	212	215	first strand
Strand 2	F	221	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AML

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AML