Analysis of interatomic Contacts of Structural Units in PDB entry:
7AMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AMY entry

There are 9 chains in PDB entry 7AMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 343	GLY 695
B	GLU 343	GLY 695
C	GLU 343	GLY 695
D	GLU 343	GLY 695
E	GLU 343	GLY 695
F	GLU 343	GLY 695
G	GLU 343	GLY 695
H	GLU 343	GLY 695
I	GLU 343	GLY 695

There are162 helices in PDB entry 7AMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	349	353	Right-handed 310
Helix 2	AA2	A	365	368	Right-handed 310
Helix 3	AA3	A	377	380	Right-handed 310
Helix 4	AA4	A	381	390	Right-handed alpha
Helix 5	AA5	A	390	395	Right-handed alpha
Helix 6	AA6	A	466	474	Right-handed alpha
Helix 7	AA7	A	479	495	Right-handed alpha
Helix 8	AA8	A	496	500	Right-handed 310
Helix 9	AA9	A	503	514	Right-handed alpha
Helix 10	AB1	A	516	524	Right-handed alpha
Helix 11	AB2	A	528	542	Right-handed alpha
Helix 12	AB3	A	549	560	Right-handed alpha
Helix 13	AB4	A	567	577	Right-handed alpha
Helix 14	AB5	A	577	586	Right-handed alpha
Helix 15	AB6	A	598	613	Right-handed alpha
Helix 16	AB7	A	629	644	Right-handed alpha
Helix 17	AB8	A	645	647	Right-handed 310
Helix 18	AB9	A	659	670	Right-handed alpha
Helix 19	AC1	B	349	353	Right-handed 310
Helix 20	AC2	B	365	368	Right-handed 310
Helix 21	AC3	B	377	380	Right-handed 310
Helix 22	AC4	B	381	390	Right-handed alpha
Helix 23	AC5	B	390	395	Right-handed alpha
Helix 24	AC6	B	466	474	Right-handed alpha
Helix 25	AC7	B	479	495	Right-handed alpha
Helix 26	AC8	B	496	500	Right-handed 310
Helix 27	AC9	B	503	514	Right-handed alpha
Helix 28	AD1	B	516	524	Right-handed alpha
Helix 29	AD2	B	528	542	Right-handed alpha
Helix 30	AD3	B	549	560	Right-handed alpha
Helix 31	AD4	B	567	577	Right-handed alpha
Helix 32	AD5	B	577	586	Right-handed alpha
Helix 33	AD6	B	598	613	Right-handed alpha
Helix 34	AD7	B	629	644	Right-handed alpha
Helix 35	AD8	B	645	647	Right-handed 310
Helix 36	AD9	B	659	670	Right-handed alpha
Helix 37	AE1	C	349	353	Right-handed 310
Helix 38	AE2	C	365	368	Right-handed 310
Helix 39	AE3	C	377	380	Right-handed 310
Helix 40	AE4	C	381	390	Right-handed alpha
Helix 41	AE5	C	390	395	Right-handed alpha
Helix 42	AE6	C	466	474	Right-handed alpha
Helix 43	AE7	C	479	495	Right-handed alpha
Helix 44	AE8	C	496	500	Right-handed 310
Helix 45	AE9	C	503	514	Right-handed alpha
Helix 46	AF1	C	516	524	Right-handed alpha
Helix 47	AF2	C	528	542	Right-handed alpha
Helix 48	AF3	C	549	560	Right-handed alpha
Helix 49	AF4	C	567	577	Right-handed alpha
Helix 50	AF5	C	577	586	Right-handed alpha
Helix 51	AF6	C	598	613	Right-handed alpha
Helix 52	AF7	C	629	644	Right-handed alpha
Helix 53	AF8	C	645	647	Right-handed 310
Helix 54	AF9	C	659	670	Right-handed alpha
Helix 55	AG1	D	349	353	Right-handed 310
Helix 56	AG2	D	365	368	Right-handed 310
Helix 57	AG3	D	377	380	Right-handed 310
Helix 58	AG4	D	381	390	Right-handed alpha
Helix 59	AG5	D	390	395	Right-handed alpha
Helix 60	AG6	D	466	474	Right-handed alpha
Helix 61	AG7	D	479	495	Right-handed alpha
Helix 62	AG8	D	496	500	Right-handed 310
Helix 63	AG9	D	503	514	Right-handed alpha
Helix 64	AH1	D	516	524	Right-handed alpha
Helix 65	AH2	D	528	542	Right-handed alpha
Helix 66	AH3	D	549	560	Right-handed alpha
Helix 67	AH4	D	567	577	Right-handed alpha
Helix 68	AH5	D	577	586	Right-handed alpha
Helix 69	AH6	D	598	613	Right-handed alpha
Helix 70	AH7	D	629	644	Right-handed alpha
Helix 71	AH8	D	645	647	Right-handed 310
Helix 72	AH9	D	659	670	Right-handed alpha
Helix 73	AI1	E	349	353	Right-handed 310
Helix 74	AI2	E	365	368	Right-handed 310
Helix 75	AI3	E	377	380	Right-handed 310
Helix 76	AI4	E	381	390	Right-handed alpha
Helix 77	AI5	E	390	395	Right-handed alpha
Helix 78	AI6	E	466	474	Right-handed alpha
Helix 79	AI7	E	479	495	Right-handed alpha
Helix 80	AI8	E	496	500	Right-handed 310
Helix 81	AI9	E	503	514	Right-handed alpha
Helix 82	AJ1	E	516	524	Right-handed alpha
Helix 83	AJ2	E	528	542	Right-handed alpha
Helix 84	AJ3	E	549	560	Right-handed alpha
Helix 85	AJ4	E	567	577	Right-handed alpha
Helix 86	AJ5	E	577	586	Right-handed alpha
Helix 87	AJ6	E	598	613	Right-handed alpha
Helix 88	AJ7	E	629	644	Right-handed alpha
Helix 89	AJ8	E	645	647	Right-handed 310
Helix 90	AJ9	E	659	670	Right-handed alpha
Helix 91	AK1	F	349	353	Right-handed 310
Helix 92	AK2	F	365	368	Right-handed 310
Helix 93	AK3	F	377	380	Right-handed 310
Helix 94	AK4	F	381	390	Right-handed alpha
Helix 95	AK5	F	390	395	Right-handed alpha
Helix 96	AK6	F	466	474	Right-handed alpha
Helix 97	AK7	F	479	495	Right-handed alpha
Helix 98	AK8	F	496	500	Right-handed 310
Helix 99	AK9	F	503	514	Right-handed alpha
Helix 100	AL1	F	516	524	Right-handed alpha
Helix 101	AL2	F	528	542	Right-handed alpha
Helix 102	AL3	F	549	560	Right-handed alpha
Helix 103	AL4	F	567	577	Right-handed alpha
Helix 104	AL5	F	577	586	Right-handed alpha
Helix 105	AL6	F	598	613	Right-handed alpha
Helix 106	AL7	F	629	644	Right-handed alpha
Helix 107	AL8	F	645	647	Right-handed 310
Helix 108	AL9	F	659	670	Right-handed alpha
Helix 109	AM1	G	349	353	Right-handed 310
Helix 110	AM2	G	365	368	Right-handed 310
Helix 111	AM3	G	377	380	Right-handed 310
Helix 112	AM4	G	381	390	Right-handed alpha
Helix 113	AM5	G	390	395	Right-handed alpha
Helix 114	AM6	G	466	474	Right-handed alpha
Helix 115	AM7	G	479	495	Right-handed alpha
Helix 116	AM8	G	496	500	Right-handed 310
Helix 117	AM9	G	503	514	Right-handed alpha
Helix 118	AN1	G	516	524	Right-handed alpha
Helix 119	AN2	G	528	542	Right-handed alpha
Helix 120	AN3	G	549	560	Right-handed alpha
Helix 121	AN4	G	567	577	Right-handed alpha
Helix 122	AN5	G	577	586	Right-handed alpha
Helix 123	AN6	G	598	613	Right-handed alpha
Helix 124	AN7	G	629	644	Right-handed alpha
Helix 125	AN8	G	645	647	Right-handed 310
Helix 126	AN9	G	659	670	Right-handed alpha
Helix 127	AO1	H	349	353	Right-handed 310
Helix 128	AO2	H	365	368	Right-handed 310
Helix 129	AO3	H	377	380	Right-handed 310
Helix 130	AO4	H	381	390	Right-handed alpha
Helix 131	AO5	H	390	395	Right-handed alpha
Helix 132	AO6	H	466	474	Right-handed alpha
Helix 133	AO7	H	479	495	Right-handed alpha
Helix 134	AO8	H	496	500	Right-handed 310
Helix 135	AO9	H	503	514	Right-handed alpha
Helix 136	AP1	H	516	524	Right-handed alpha
Helix 137	AP2	H	528	542	Right-handed alpha
Helix 138	AP3	H	549	560	Right-handed alpha
Helix 139	AP4	H	567	577	Right-handed alpha
Helix 140	AP5	H	577	586	Right-handed alpha
Helix 141	AP6	H	598	613	Right-handed alpha
Helix 142	AP7	H	629	644	Right-handed alpha
Helix 143	AP8	H	645	647	Right-handed 310
Helix 144	AP9	H	659	670	Right-handed alpha
Helix 145	AQ1	I	349	353	Right-handed 310
Helix 146	AQ2	I	365	368	Right-handed 310
Helix 147	AQ3	I	377	380	Right-handed 310
Helix 148	AQ4	I	381	390	Right-handed alpha
Helix 149	AQ5	I	390	395	Right-handed alpha
Helix 150	AQ6	I	466	474	Right-handed alpha
Helix 151	AQ7	I	479	495	Right-handed alpha
Helix 152	AQ8	I	496	500	Right-handed 310
Helix 153	AQ9	I	503	514	Right-handed alpha
Helix 154	AR1	I	516	524	Right-handed alpha
Helix 155	AR2	I	528	542	Right-handed alpha
Helix 156	AR3	I	549	560	Right-handed alpha
Helix 157	AR4	I	567	577	Right-handed alpha
Helix 158	AR5	I	577	586	Right-handed alpha
Helix 159	AR6	I	598	613	Right-handed alpha
Helix 160	AR7	I	629	644	Right-handed alpha
Helix 161	AR8	I	645	647	Right-handed 310
Helix 162	AR9	I	659	670	Right-handed alpha

There are 36 sheets in PDB entry 7AMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	404	first strand
Strand 2	A	359	363	parallel
Strand 3	A	413	418	anti-parallel
Strand 4	A	422	427	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	458	462	anti-parallel
Strand 3	A	433	436	anti-parallel
Strand 4	A	476	478	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	594	first strand
Strand 2	A	688	690	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	654	first strand
Strand 2	A	676	677	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	404	first strand
Strand 2	B	359	363	parallel
Strand 3	B	413	418	anti-parallel
Strand 4	B	422	427	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	458	462	anti-parallel
Strand 3	B	433	436	anti-parallel
Strand 4	B	476	478	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	594	first strand
Strand 2	B	688	690	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	654	first strand
Strand 2	B	676	677	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	404	first strand
Strand 2	C	359	363	parallel
Strand 3	C	413	418	anti-parallel
Strand 4	C	422	427	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	451	first strand
Strand 2	C	458	462	anti-parallel
Strand 3	C	433	436	anti-parallel
Strand 4	C	476	478	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	592	594	first strand
Strand 2	C	688	690	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	654	first strand
Strand 2	C	676	677	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	404	first strand
Strand 2	D	359	363	parallel
Strand 3	D	413	418	anti-parallel
Strand 4	D	422	427	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	448	451	first strand
Strand 2	D	458	462	anti-parallel
Strand 3	D	433	436	anti-parallel
Strand 4	D	476	478	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	592	594	first strand
Strand 2	D	688	690	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	653	654	first strand
Strand 2	D	676	677	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	402	404	first strand
Strand 2	E	359	363	parallel
Strand 3	E	413	418	anti-parallel
Strand 4	E	422	427	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	448	451	first strand
Strand 2	E	458	462	anti-parallel
Strand 3	E	433	436	anti-parallel
Strand 4	E	476	478	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	592	594	first strand
Strand 2	E	688	690	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	653	654	first strand
Strand 2	E	676	677	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	402	404	first strand
Strand 2	F	359	363	parallel
Strand 3	F	413	418	anti-parallel
Strand 4	F	422	427	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	448	451	first strand
Strand 2	F	458	462	anti-parallel
Strand 3	F	433	436	anti-parallel
Strand 4	F	476	478	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	592	594	first strand
Strand 2	F	688	690	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	653	654	first strand
Strand 2	F	676	677	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	402	404	first strand
Strand 2	G	359	363	parallel
Strand 3	G	413	418	anti-parallel
Strand 4	G	422	427	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	448	451	first strand
Strand 2	G	458	462	anti-parallel
Strand 3	G	433	436	anti-parallel
Strand 4	G	476	478	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	592	594	first strand
Strand 2	G	688	690	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	653	654	first strand
Strand 2	G	676	677	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	402	404	first strand
Strand 2	H	359	363	parallel
Strand 3	H	413	418	anti-parallel
Strand 4	H	422	427	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	448	451	first strand
Strand 2	H	458	462	anti-parallel
Strand 3	H	433	436	anti-parallel
Strand 4	H	476	478	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	592	594	first strand
Strand 2	H	688	690	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	653	654	first strand
Strand 2	H	676	677	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	402	404	first strand
Strand 2	I	359	363	parallel
Strand 3	I	413	418	anti-parallel
Strand 4	I	422	427	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	448	451	first strand
Strand 2	I	458	462	anti-parallel
Strand 3	I	433	436	anti-parallel
Strand 4	I	476	478	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	592	594	first strand
Strand 2	I	688	690	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	653	654	first strand
Strand 2	I	676	677	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AMY