Analysis of interatomic Contacts of Structural Units in PDB entry:
7AOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AOO entry

There are 4 chains in PDB entry 7AOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 12	ASN 179
B	ASP 15	ASN 179
C	GLU 21	ASN 179
D	TYR 20	ASN 179

There are 37 helices in PDB entry 7AOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	22	Right-handed alpha
Helix 2	AA2	A	23	26	Right-handed 310
Helix 3	AA3	A	44	47	Right-handed 310
Helix 4	AA4	A	60	77	Right-handed alpha
Helix 5	AA5	A	90	100	Right-handed alpha
Helix 6	AA6	A	111	119	Right-handed alpha
Helix 7	AA7	A	139	144	Right-handed alpha
Helix 8	AA8	A	149	160	Right-handed alpha
Helix 9	AA9	A	167	170	Right-handed 310
Helix 10	AB1	A	171	178	Right-handed alpha
Helix 11	AB2	B	16	22	Right-handed alpha
Helix 12	AB3	B	23	26	Right-handed 310
Helix 13	AB4	B	44	47	Right-handed 310
Helix 14	AB5	B	60	77	Right-handed alpha
Helix 15	AB6	B	90	101	Right-handed alpha
Helix 16	AB7	B	111	119	Right-handed alpha
Helix 17	AB8	B	139	144	Right-handed alpha
Helix 18	AB9	B	149	160	Right-handed alpha
Helix 19	AC1	B	167	170	Right-handed 310
Helix 20	AC2	B	171	178	Right-handed alpha
Helix 21	AC3	C	21	26	Right-handed 310
Helix 22	AC4	C	44	47	Right-handed 310
Helix 23	AC5	C	60	77	Right-handed alpha
Helix 24	AC6	C	90	100	Right-handed alpha
Helix 25	AC7	C	111	119	Right-handed alpha
Helix 26	AC8	C	139	146	Right-handed alpha
Helix 27	AC9	C	149	160	Right-handed alpha
Helix 28	AD1	C	173	178	Right-handed alpha
Helix 29	AD2	D	21	26	Right-handed alpha
Helix 30	AD3	D	44	47	Right-handed 310
Helix 31	AD4	D	60	77	Right-handed alpha
Helix 32	AD5	D	90	100	Right-handed alpha
Helix 33	AD6	D	111	119	Right-handed alpha
Helix 34	AD7	D	139	145	Right-handed alpha
Helix 35	AD8	D	149	160	Right-handed alpha
Helix 36	AD9	D	167	170	Right-handed 310
Helix 37	AE1	D	171	179	Right-handed alpha

There are 8 sheets in PDB entry 7AOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	37	42	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	81	86	parallel
Strand 3	A	51	56	parallel
Strand 4	A	125	129	anti-parallel
Strand 5	A	135	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	38	42	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	81	86	parallel
Strand 3	B	51	56	parallel
Strand 4	B	125	129	anti-parallel
Strand 5	B	135	137	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	34	first strand
Strand 2	C	37	42	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	81	86	parallel
Strand 3	C	51	56	parallel
Strand 4	C	125	129	anti-parallel
Strand 5	C	135	137	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	34	first strand
Strand 2	D	37	42	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	81	86	parallel
Strand 3	D	51	56	parallel
Strand 4	D	125	129	anti-parallel
Strand 5	D	135	137	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AOO