Analysis of interatomic Contacts of Structural Units in PDB entry:
7AP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AP8 entry

There are 12 chains in PDB entry 7AP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 2SER 1269
B
GLU 8PHE 1162
C
GLN 2LEU 305
E
MET 1ALA 184
F
ILE 62TYR 164
G
SER 2VAL 159
I
THR 104ASN 795
J
VAL 2ILE 62
N
C 45 G 60
P
A 1 A 5
S
ASN 36LEU 151
T
C 1 G 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are148 helices in PDB entry 7AP8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
13 19Right-handed alpha
Helix 2
AA2
A
78 87Right-handed alpha
Helix 3
AA3
A
113 126Right-handed alpha
Helix 4
AA4
A
161 171Right-handed alpha
Helix 5
AA5
A
173 175Right-handed 310
Helix 6
AA6
A
176 181Right-handed alpha
Helix 7
AA7
A
186 188Right-handed 310
Helix 8
AA8
A
218 233Right-handed alpha
Helix 9
AA9
A
236 249Right-handed alpha
Helix 10
AB1
A
250 253Right-handed 310
Helix 11
AB2
A
261 267Right-handed 310
Helix 12
AB3
A
271 277Right-handed alpha
Helix 13
AB4
A
304 311Right-handed alpha
Helix 14
AB5
A
321 331Right-handed alpha
Helix 15
AB6
A
385 387Right-handed 310
Helix 16
AB7
A
408 413Right-handed alpha
Helix 17
AB8
A
428 438Right-handed alpha
Helix 18
AB9
A
460 471Right-handed alpha
Helix 19
AC1
A
475 484Right-handed alpha
Helix 20
AC2
A
485 488Right-handed 310
Helix 21
AC3
A
499 508Right-handed alpha
Helix 22
AC4
A
529 534Right-handed alpha
Helix 23
AC5
A
540 549Right-handed alpha
Helix 24
AC6
A
550 573Right-handed alpha
Helix 25
AC7
A
577 582Right-handed alpha
Helix 26
AC8
A
585 615Right-handed alpha
Helix 27
AC9
A
622 656Right-handed alpha
Helix 28
AD1
A
659 668Right-handed alpha
Helix 29
AD2
A
672 681Right-handed alpha
Helix 30
AD3
A
711 715Right-handed 310
Helix 31
AD4
A
727 764Right-handed alpha
Helix 32
AD5
A
809 821Right-handed alpha
Helix 33
AD6
A
841 846Right-handed 310
Helix 34
AD7
A
856 877Right-handed alpha
Helix 35
AD8
A
882 893Right-handed alpha
Helix 36
AD9
A
901 919Right-handed alpha
Helix 37
AE1
A
925 943Right-handed alpha
Helix 38
AE2
A
944 946Right-handed 310
Helix 39
AE3
A
960 970Right-handed alpha
Helix 40
AE4
A
984 996Right-handed alpha
Helix 41
AE5
A
1001 1004Right-handed 310
Helix 42
AE6
A
1024 1030Right-handed alpha
Helix 43
AE7
A
1033 1048Right-handed alpha
Helix 44
AE8
A
1077 1093Right-handed alpha
Helix 45
AE9
A
1129 1136Right-handed 310
Helix 46
AF1
A
1146 1154Right-handed alpha
Helix 47
AF2
A
1155 1170Right-handed alpha
Helix 48
AF3
A
1175 1177Right-handed 310
Helix 49
AF4
A
1178 1190Right-handed alpha
Helix 50
AF5
A
1207 1215Right-handed alpha
Helix 51
AF6
A
1218 1227Right-handed alpha
Helix 52
AF7
A
1234 1241Right-handed alpha
Helix 53
AF8
A
1247 1252Right-handed 310
Helix 54
AF9
A
1258 1263Right-handed alpha
Helix 55
AG1
B
9 17Right-handed alpha
Helix 56
AG2
B
28 43Right-handed alpha
Helix 57
AG3
B
44 51Right-handed alpha
Helix 58
AG4
B
81 89Right-handed alpha
Helix 59
AG5
B
135 139Right-handed 310
Helix 60
AG6
B
233 241Right-handed alpha
Helix 61
AG7
B
244 253Right-handed alpha
Helix 62
AG8
B
257 278Right-handed alpha
Helix 63
AG9
B
282 298Right-handed alpha
Helix 64
AH1
B
307 314Right-handed alpha
Helix 65
AH2
B
323 344Right-handed alpha
Helix 66
AH3
B
353 357Right-handed 310
Helix 67
AH4
B
361 392Right-handed alpha
Helix 68
AH5
B
406 416Right-handed alpha
Helix 69
AH6
B
435 440Right-handed alpha
Helix 70
AH7
B
463 467Right-handed 310
Helix 71
AH8
B
498 515Right-handed alpha
Helix 72
AH9
B
518 522Right-handed 310
Helix 73
AI1
B
541 543Right-handed 310
Helix 74
AI2
B
544 558Right-handed alpha
Helix 75
AI3
B
605 611Right-handed alpha
Helix 76
AI4
B
615 623Right-handed alpha
Helix 77
AI5
B
632 637Right-handed alpha
Helix 78
AI6
B
643 649Right-handed alpha
Helix 79
AI7
B
651 656Right-handed alpha
Helix 80
AI8
B
664 669Right-handed 310
Helix 81
AI9
B
672 676Right-handed 310
Helix 82
AJ1
B
678 682Right-handed 310
Helix 83
AJ2
B
683 695Right-handed alpha
Helix 84
AJ3
B
725 732Right-handed alpha
Helix 85
AJ4
B
762 767Right-handed alpha
Helix 86
AJ5
B
795 799Right-handed 310
Helix 87
AJ6
B
898 902Right-handed 310
Helix 88
AJ7
B
916 923Right-handed alpha
Helix 89
AJ8
B
925 941Right-handed alpha
Helix 90
AJ9
B
961 977Right-handed alpha
Helix 91
AK1
B
983 990Right-handed alpha
Helix 92
AK2
B
1054 1065Right-handed alpha
Helix 93
AK3
B
1066 1075Right-handed alpha
Helix 94
AK4
B
1077 1081Right-handed 310
Helix 95
AK5
B
1103 1109Right-handed alpha
Helix 96
AK6
B
1121 1134Right-handed alpha
Helix 97
AK7
C
15 30Right-handed alpha
Helix 98
AK8
C
48 58Right-handed alpha
Helix 99
AK9
C
59 64Right-handed 310
Helix 100
AL1
C
65 67Right-handed 310
Helix 101
AL2
C
68 74Right-handed alpha
Helix 102
AL3
C
95 99Right-handed 310
Helix 103
AL4
C
117 123Right-handed 310
Helix 104
AL5
C
152 158Right-handed alpha
Helix 105
AL6
C
162 177Right-handed alpha
Helix 106
AL7
C
191 193Right-handed 310
Helix 107
AL8
C
207 229Right-handed alpha
Helix 108
AL9
C
255 265Right-handed alpha
Helix 109
AM1
C
278 282Right-handed 310
Helix 110
AM2
C
283 304Right-handed alpha
Helix 111
AM3
E
4 22Right-handed alpha
Helix 112
AM4
E
28 33Right-handed alpha
Helix 113
AM5
E
98 101Right-handed 310
Helix 114
AM6
E
117 129Right-handed alpha
Helix 115
AM7
E
146 153Right-handed alpha
Helix 116
AM8
F
63 75Right-handed alpha
Helix 117
AM9
F
78 95Right-handed alpha
Helix 118
AN1
F
107 111Right-handed 310
Helix 119
AN2
F
112 123Right-handed alpha
Helix 120
AN3
F
140 142Right-handed 310
Helix 121
AN4
F
143 161Right-handed alpha
Helix 122
AN5
G
15 19Right-handed 310
Helix 123
AN6
G
22 36Right-handed alpha
Helix 124
AN7
I
105 119Right-handed alpha
Helix 125
AN8
I
170 186Right-handed alpha
Helix 126
AN9
I
254 264Right-handed alpha
Helix 127
AO1
I
265 267Right-handed 310
Helix 128
AO2
I
269 272Right-handed 310
Helix 129
AO3
I
273 279Right-handed alpha
Helix 130
AO4
I
283 285Right-handed 310
Helix 131
AO5
I
286 291Right-handed alpha
Helix 132
AO6
I
326 336Right-handed alpha
Helix 133
AO7
I
341 353Right-handed alpha
Helix 134
AO8
I
638 649Right-handed alpha
Helix 135
AO9
I
688 694Right-handed alpha
Helix 136
AP1
I
705 710Right-handed alpha
Helix 137
AP2
I
723 742Right-handed alpha
Helix 138
AP3
I
756 770Right-handed alpha
Helix 139
AP4
I
773 793Right-handed alpha
Helix 140
AP5
J
14 20Right-handed alpha
Helix 141
AP6
J
27 36Right-handed alpha
Helix 142
AP7
J
37 47Right-handed alpha
Helix 143
AP8
S
37 51Right-handed alpha
Helix 144
AP9
S
59 63Right-handed 310
Helix 145
AQ1
S
72 81Right-handed alpha
Helix 146
AQ2
S
82 85Right-handed 310
Helix 147
AQ3
S
102 109Right-handed alpha
Helix 148
AQ4
S
112 131Right-handed alpha
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There are 47 sheets in PDB entry 7AP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1229 1231first strand
Strand 2
A
4 11anti-parallel
Strand 3
B
1136 1142anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 24first strand
Strand 2
A
64 67parallel
Strand 3
A
194 197anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
73 74first strand
Strand 2
A
190 191anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
142 144first strand
Strand 2
A
151 153anti-parallel
Strand 3
A
159 160anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
281 282first strand
Strand 2
B
1051 1052anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1027 1029first strand
Strand 2
A
285 292anti-parallel
Strand 3
A
420 424anti-parallel
Strand 4
A
375 379anti-parallel
Strand 5
A
389 396anti-parallel
Strand 6
A
300 303parallel
Strand 7
A
402 404anti-parallel
Strand 8
A
285 292parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
312 316first strand
Strand 2
A
365 369anti-parallel
Strand 3
A
334 339anti-parallel
Strand 4
A
344 347anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
518 519first strand
Strand 2
A
522 523anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
684 685first strand
Strand 2
A
717 718anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
767 768first strand
Strand 2
A
774 775anti-parallel
Strand 3
A
780 782anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
796 799first strand
Strand 2
A
835 838anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
825 826first strand
Strand 2
A
831 832anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1106 1107first strand
Strand 2
A
1121 1127anti-parallel
Strand 3
A
976 982anti-parallel
Strand 4
A
1142 1144anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
998 999first strand
Strand 2
A
1094 1095anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1008 1012first strand
Strand 2
A
1015 1023anti-parallel
Strand 3
A
1065 1072anti-parallel
Strand 4
A
1055 1059anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
137 138first strand
Strand 2
F
128 131anti-parallel
Strand 3
A
1253 1256anti-parallel
Strand 4
G
59 62anti-parallel
Strand 5
G
65 78anti-parallel
Strand 6
G
3 14anti-parallel
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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
137 138first strand
Strand 2
F
128 131anti-parallel
Strand 3
A
1253 1256anti-parallel
Strand 4
G
59 62anti-parallel
Strand 5
G
65 78anti-parallel
Strand 6
G
43 50anti-parallel
Strand 7
G
39 40anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1264 1265first strand
Strand 2
I
307 308parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
54 59first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
99 107anti-parallel
Strand 4
B
112 121anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
74 76first strand
Strand 2
B
93 97anti-parallel
Strand 3
B
128 131anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
157 158first strand
Strand 2
B
164 167anti-parallel
Strand 3
B
426 428anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
359 360first strand
Strand 2
B
169 171anti-parallel
Strand 3
B
443 445parallel
Strand 4
B
486 487anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
179 184first strand
Strand 2
B
187 195anti-parallel
Strand 3
B
205 213anti-parallel
Strand 4
B
221 223anti-parallel
Strand 5
B
231 232anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
493 494first strand
Strand 2
B
587 595anti-parallel
Strand 3
B
627 631anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
598 599first strand
Strand 2
B
587 595anti-parallel
Strand 3
B
660 661anti-parallel
Strand 4
B
640 641parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
535 540first strand
Strand 2
B
528 532anti-parallel
Strand 3
B
577 581parallel
Strand 4
B
567 571anti-parallel
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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
712 715first strand
Strand 2
B
772 783anti-parallel
Strand 3
B
864 875anti-parallel
Strand 4
B
853 861anti-parallel
Strand 5
J
60 61parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
723 724first strand
Strand 2
B
952 953parallel
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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
992 993first strand
Strand 2
B
1008 1017anti-parallel
Strand 3
B
882 884anti-parallel
Strand 4
B
891 897anti-parallel
Strand 5
B
757 761parallel
Strand 6
B
913 915anti-parallel
Strand 7
B
740 746parallel
Strand 8
B
1008 1017anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1086 1087first strand
Strand 2
B
1115 1116anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1095 1097first strand
Strand 2
B
1100 1102anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
5 13first strand
Strand 2
C
195 203anti-parallel
Strand 3
C
188 190anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
32 33first strand
Strand 2
C
183 184anti-parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
37 43first strand
Strand 2
C
139 144anti-parallel
Strand 3
C
78 85anti-parallel
Strand 4
C
100 104anti-parallel
Strand 5
C
111 113anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
93 94first strand
Strand 2
C
126 127anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
251 253first strand
Strand 2
C
273 275anti-parallel
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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
35 38first strand
Strand 2
E
48 52anti-parallel
Strand 3
E
59 61anti-parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
63 65first strand
Strand 2
E
82 85parallel
Strand 3
E
94 96parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
113 115first strand
Strand 2
E
161 165anti-parallel
Strand 3
E
175 181anti-parallel
Strand 4
E
141 143parallel
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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
84 91first strand
Strand 2
G
97 100anti-parallel
Strand 3
G
104 108anti-parallel
Strand 4
G
152 158parallel
Strand 5
G
136 145anti-parallel
Strand 6
G
84 91anti-parallel
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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
114 116first strand
Strand 2
G
124 126anti-parallel
Strand 3
G
130 132anti-parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
121 123first strand
Strand 2
I
234 237anti-parallel
Strand 3
I
242 245anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
161 166first strand
Strand 2
I
128 133parallel
Strand 3
I
198 199anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
209 217first strand
Strand 2
I
220 228anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
355 357first strand
Strand 2
I
360 362anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
657 659first strand
Strand 2
I
698 700anti-parallel
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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
667 670first strand
Strand 2
I
674 678anti-parallel
Strand 3
I
683 687anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il