Analysis of interatomic Contacts of Structural Units in PDB entry:
7APF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7APF entry

There are 2 chains in PDB entry 7APF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 814ARG 1103
B
 PRO 814ARG 1103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7APF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
818 820Right-handed 310
Helix 2
AA2
A
861 878Right-handed alpha
Helix 3
AA3
A
893 896Right-handed 310
Helix 4
AA4
A
909 918Right-handed alpha
Helix 5
AA5
A
919 921Right-handed 310
Helix 6
AA6
A
922 943Right-handed alpha
Helix 7
AA7
A
951 953Right-handed 310
Helix 8
AA8
A
990 994Right-handed 310
Helix 9
AA9
A
995 1002Right-handed alpha
Helix 10
AB1
A
1006 1022Right-handed alpha
Helix 11
AB2
A
1025 1028Right-handed 310
Helix 12
AB3
A
1029 1038Right-handed alpha
Helix 13
AB4
A
1045 1056Right-handed alpha
Helix 14
AB5
A
1067 1078Right-handed alpha
Helix 15
AB6
A
1081 1085Right-handed 310
Helix 16
AB7
A
1087 1103Right-handed alpha
Helix 17
AB8
B
818 820Right-handed 310
Helix 18
AB9
B
861 878Right-handed alpha
Helix 19
AC1
B
909 918Right-handed alpha
Helix 20
AC2
B
919 921Right-handed 310
Helix 21
AC3
B
922 943Right-handed alpha
Helix 22
AC4
B
951 953Right-handed 310
Helix 23
AC5
B
990 994Right-handed 310
Helix 24
AC6
B
995 1002Right-handed alpha
Helix 25
AC7
B
1006 1022Right-handed alpha
Helix 26
AC8
B
1025 1028Right-handed 310
Helix 27
AC9
B
1029 1039Right-handed alpha
Helix 28
AD1
B
1045 1056Right-handed alpha
Helix 29
AD2
B
1067 1078Right-handed alpha
Helix 30
AD3
B
1081 1085Right-handed 310
Helix 31
AD4
B
1087 1103Right-handed alpha
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There are 8 sheets in PDB entry 7APF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 830first strand
Strand 2
A
834 841anti-parallel
Strand 3
A
850 857anti-parallel
Strand 4
A
898 903anti-parallel
Strand 5
A
886 891anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
945 946first strand
Strand 2
A
972 973anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
955 959first strand
Strand 2
A
962 965anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
980 982first strand
Strand 2
A
1003 1005anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
822 830first strand
Strand 2
B
834 841anti-parallel
Strand 3
B
850 857anti-parallel
Strand 4
B
899 902anti-parallel
Strand 5
B
886 890anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
945 946first strand
Strand 2
B
972 973anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
955 959first strand
Strand 2
B
962 965anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
980 982first strand
Strand 2
B
1003 1005anti-parallel
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