Analysis of interatomic Contacts of Structural Units in PDB entry:
7APR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7APR entry

There are 8 chains in PDB entry 7APR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 323
B	MET 1	LYS 322
C	MET 1	GLN 323
D	MET 1	GLN 323
E	MET 1	GLN 323
F	MET 1	GLN 323
G	MET 1	LYS 322
H	MET 1	MET 318

There are 83 helices in PDB entry 7APR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	38	43	Right-handed alpha
Helix 3	AA3	A	53	58	Right-handed 310
Helix 4	AA4	A	72	88	Right-handed alpha
Helix 5	AA5	A	151	155	Right-handed 310
Helix 6	AA6	A	165	178	Right-handed alpha
Helix 7	AA7	A	199	209	Right-handed alpha
Helix 8	AA8	A	253	259	Right-handed alpha
Helix 9	AA9	A	291	295	Right-handed 310
Helix 10	AB1	A	303	308	Right-handed alpha
Helix 11	AB2	A	309	321	Right-handed alpha
Helix 12	AB3	B	12	25	Right-handed alpha
Helix 13	AB4	B	38	43	Right-handed alpha
Helix 14	AB5	B	72	88	Right-handed alpha
Helix 15	AB6	B	151	155	Right-handed 310
Helix 16	AB7	B	165	178	Right-handed alpha
Helix 17	AB8	B	199	209	Right-handed alpha
Helix 18	AB9	B	253	260	Right-handed alpha
Helix 19	AC1	B	291	295	Right-handed 310
Helix 20	AC2	B	303	308	Right-handed alpha
Helix 21	AC3	B	309	321	Right-handed alpha
Helix 22	AC4	C	12	25	Right-handed alpha
Helix 23	AC5	C	38	43	Right-handed alpha
Helix 24	AC6	C	53	58	Right-handed 310
Helix 25	AC7	C	72	88	Right-handed alpha
Helix 26	AC8	C	151	155	Right-handed 310
Helix 27	AC9	C	165	178	Right-handed alpha
Helix 28	AD1	C	199	209	Right-handed alpha
Helix 29	AD2	C	253	261	Right-handed alpha
Helix 30	AD3	C	291	295	Right-handed 310
Helix 31	AD4	C	303	308	Right-handed alpha
Helix 32	AD5	C	309	321	Right-handed alpha
Helix 33	AD6	D	12	25	Right-handed alpha
Helix 34	AD7	D	38	43	Right-handed alpha
Helix 35	AD8	D	53	58	Right-handed 310
Helix 36	AD9	D	72	88	Right-handed alpha
Helix 37	AE1	D	151	155	Right-handed 310
Helix 38	AE2	D	165	178	Right-handed alpha
Helix 39	AE3	D	199	209	Right-handed alpha
Helix 40	AE4	D	253	259	Right-handed alpha
Helix 41	AE5	D	291	295	Right-handed 310
Helix 42	AE6	D	303	308	Right-handed alpha
Helix 43	AE7	D	309	321	Right-handed alpha
Helix 44	AE8	E	12	25	Right-handed alpha
Helix 45	AE9	E	38	43	Right-handed alpha
Helix 46	AF1	E	53	58	Right-handed 310
Helix 47	AF2	E	72	88	Right-handed alpha
Helix 48	AF3	E	151	155	Right-handed 310
Helix 49	AF4	E	165	178	Right-handed alpha
Helix 50	AF5	E	199	209	Right-handed alpha
Helix 51	AF6	E	253	259	Right-handed alpha
Helix 52	AF7	E	291	295	Right-handed 310
Helix 53	AF8	E	303	308	Right-handed alpha
Helix 54	AF9	E	309	321	Right-handed alpha
Helix 55	AG1	F	12	25	Right-handed alpha
Helix 56	AG2	F	38	43	Right-handed alpha
Helix 57	AG3	F	53	58	Right-handed 310
Helix 58	AG4	F	72	88	Right-handed alpha
Helix 59	AG5	F	151	155	Right-handed 310
Helix 60	AG6	F	165	178	Right-handed alpha
Helix 61	AG7	F	199	209	Right-handed alpha
Helix 62	AG8	F	253	259	Right-handed alpha
Helix 63	AG9	F	291	295	Right-handed 310
Helix 64	AH1	F	303	308	Right-handed alpha
Helix 65	AH2	F	309	321	Right-handed alpha
Helix 66	AH3	G	12	25	Right-handed alpha
Helix 67	AH4	G	38	43	Right-handed alpha
Helix 68	AH5	G	54	58	Right-handed 310
Helix 69	AH6	G	75	88	Right-handed alpha
Helix 70	AH7	G	151	155	Right-handed 310
Helix 71	AH8	G	165	177	Right-handed alpha
Helix 72	AH9	G	253	259	Right-handed alpha
Helix 73	AI1	G	291	295	Right-handed 310
Helix 74	AI2	G	303	308	Right-handed alpha
Helix 75	AI3	G	309	320	Right-handed alpha
Helix 76	AI4	H	12	25	Right-handed alpha
Helix 77	AI5	H	38	43	Right-handed alpha
Helix 78	AI6	H	73	88	Right-handed alpha
Helix 79	AI7	H	151	155	Right-handed 310
Helix 80	AI8	H	166	178	Right-handed alpha
Helix 81	AI9	H	199	210	Right-handed alpha
Helix 82	AJ1	H	253	261	Right-handed alpha
Helix 83	AJ2	H	312	318	Right-handed alpha

There are 35 sheets in PDB entry 7APR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	115	118	parallel
Strand 3	A	106	110	anti-parallel
Strand 4	A	99	103	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	29	32	parallel
Strand 3	A	6	9	parallel
Strand 4	A	120	123	parallel
Strand 5	A	287	289	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	243	246	parallel
Strand 3	A	158	162	parallel
Strand 4	A	181	185	parallel
Strand 5	A	213	215	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	223	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	235	240	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	266	first strand
Strand 2	A	271	273	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	29	32	parallel
Strand 3	B	2	9	parallel
Strand 4	B	115	123	parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	97	103	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	29	32	parallel
Strand 3	B	2	9	parallel
Strand 4	B	115	123	parallel
Strand 5	B	287	289	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	243	246	parallel
Strand 3	B	158	162	parallel
Strand 4	B	181	185	parallel
Strand 5	B	213	215	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	223	first strand
Strand 2	B	227	232	anti-parallel
Strand 3	B	235	240	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	115	118	parallel
Strand 3	C	106	110	anti-parallel
Strand 4	C	99	103	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	29	32	parallel
Strand 3	C	6	9	parallel
Strand 4	C	120	123	parallel
Strand 5	C	287	289	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	243	246	parallel
Strand 3	C	158	162	parallel
Strand 4	C	181	185	parallel
Strand 5	C	213	215	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	223	first strand
Strand 2	C	227	232	anti-parallel
Strand 3	C	235	240	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	265	first strand
Strand 2	C	272	273	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	115	118	parallel
Strand 3	D	107	111	anti-parallel
Strand 4	D	97	102	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	29	32	parallel
Strand 3	D	6	9	parallel
Strand 4	D	120	123	parallel
Strand 5	D	287	289	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	243	246	parallel
Strand 3	D	158	162	parallel
Strand 4	D	181	185	parallel
Strand 5	D	213	215	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	223	first strand
Strand 2	D	227	232	anti-parallel
Strand 3	D	235	240	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	3	first strand
Strand 2	E	115	118	parallel
Strand 3	E	106	111	anti-parallel
Strand 4	E	97	103	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	29	32	parallel
Strand 3	E	6	9	parallel
Strand 4	E	120	123	parallel
Strand 5	E	287	289	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	243	246	parallel
Strand 3	E	158	162	parallel
Strand 4	E	181	185	parallel
Strand 5	E	213	215	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	223	first strand
Strand 2	E	227	232	anti-parallel
Strand 3	E	235	240	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	265	first strand
Strand 2	E	272	273	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	3	first strand
Strand 2	F	115	118	parallel
Strand 3	F	106	110	anti-parallel
Strand 4	F	99	103	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	92	first strand
Strand 2	F	29	32	parallel
Strand 3	F	6	9	parallel
Strand 4	F	120	123	parallel
Strand 5	F	287	289	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	F	243	246	parallel
Strand 3	F	158	162	parallel
Strand 4	F	181	185	parallel
Strand 5	F	213	215	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	223	first strand
Strand 2	F	227	232	anti-parallel
Strand 3	F	235	240	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	32	first strand
Strand 2	G	2	9	parallel
Strand 3	G	115	123	parallel
Strand 4	G	106	110	anti-parallel
Strand 5	G	99	103	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	32	first strand
Strand 2	G	2	9	parallel
Strand 3	G	115	123	parallel
Strand 4	G	287	289	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	145	first strand
Strand 2	G	243	246	parallel
Strand 3	G	159	162	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	218	223	first strand
Strand 2	G	227	232	anti-parallel
Strand 3	G	235	240	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	3	first strand
Strand 2	H	115	118	parallel
Strand 3	H	106	111	anti-parallel
Strand 4	H	97	103	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	91	92	first strand
Strand 2	H	29	32	parallel
Strand 3	H	6	9	parallel
Strand 4	H	120	123	parallel
Strand 5	H	287	289	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	145	first strand
Strand 2	H	243	247	parallel
Strand 3	H	158	163	parallel
Strand 4	H	181	185	parallel
Strand 5	H	213	214	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	218	224	first strand
Strand 2	H	227	232	anti-parallel
Strand 3	H	235	240	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7APR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7APR