Analysis of interatomic Contacts of Structural Units in PDB entry:
7AQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AQB entry

There are 2 chains in PDB entry 7AQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 13SER 320
B
 MET 21SER 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 7AQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 71Right-handed alpha
Helix 2
AA2
A
115 121Right-handed alpha
Helix 3
AA3
A
125 146Right-handed alpha
Helix 4
AA4
A
154 156Right-handed 310
Helix 5
AA5
A
189 193Right-handed 310
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
210 228Right-handed alpha
Helix 8
AA8
A
236 248Right-handed alpha
Helix 9
AA9
A
252 261Right-handed alpha
Helix 10
AB1
A
264 271Right-handed alpha
Helix 11
AB2
A
277 282Right-handed alpha
Helix 12
AB3
A
286 295Right-handed alpha
Helix 13
AB4
A
300 304Right-handed 310
Helix 14
AB5
A
306 313Right-handed alpha
Helix 15
AB6
A
313 318Right-handed alpha
Helix 16
AB7
B
55 72Right-handed alpha
Helix 17
AB8
B
115 121Right-handed alpha
Helix 18
AB9
B
125 146Right-handed alpha
Helix 19
AC1
B
154 156Right-handed 310
Helix 20
AC2
B
189 193Right-handed 310
Helix 21
AC3
B
199 205Right-handed alpha
Helix 22
AC4
B
210 228Right-handed alpha
Helix 23
AC5
B
236 248Right-handed alpha
Helix 24
AC6
B
252 263Right-handed alpha
Helix 25
AC7
B
263 268Right-handed alpha
Helix 26
AC8
B
277 282Right-handed alpha
Helix 27
AC9
B
286 295Right-handed alpha
Helix 28
AD1
B
300 304Right-handed 310
Helix 29
AD2
B
306 313Right-handed alpha
Helix 30
AD3
B
313 318Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7AQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
45 52anti-parallel
Strand 5
A
103 109anti-parallel
Strand 6
A
80 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
158 161anti-parallel
Strand 3
A
166 169anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
44 51anti-parallel
Strand 4
B
104 109anti-parallel
Strand 5
B
80 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
158 161anti-parallel
Strand 3
B
166 169anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il