Analysis of interatomic Contacts of Structural Units in PDB entry:
7AQD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AQD entry

There are 32 chains in PDB entry 7AQD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 2	PRO 434
A	U 3	C 2925
B	U 3	A 114
C	ALA 2	ASN 276
D	THR 2	SER 208
E	PRO 2	LEU 206
F	ASN 2	LYS 179
G	SER 2	LYS 176
I	VAL 8	GLU 140
J	THR 4	GLY 145
K	MET 1	ILE 122
L	MET 1	ILE 146
M	MET 1	GLY 138
N	SER 2	VAL 120
O	MET 1	PHE 120
Q	PRO 2	ASN 118
S	GLN 2	LYS 110
T	G 1	A 76
U	HIS 2	LEU 101
V	SER 11	VAL 92
W	ALA 1	ALA 7
X	ARG 3	GLU 60
Z	ALA 2	GLN 59
a	GLN 5	ARG 118
b	ALA 2	ASN 55
c	MET 1	THR 48
d	MET 1	ALA 44
e	PRO 2	ILE 65
f	LYS 2	GLY 37
g	TYR 2	ALA 102
h	MET 1	PHE 93
i	MET 1	ASN 65

There are 93 helices in PDB entry 7AQD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	4	19	Right-handed alpha
Helix 2	AA2	R	73	83	Right-handed alpha
Helix 3	AA3	R	123	127	Right-handed 310
Helix 4	AA4	R	191	200	Right-handed alpha
Helix 5	AA5	R	204	215	Right-handed alpha
Helix 6	AA6	R	223	235	Right-handed alpha
Helix 7	AA7	R	236	238	Right-handed 310
Helix 8	AA8	R	269	277	Right-handed alpha
Helix 9	AA9	R	281	335	Right-handed alpha
Helix 10	AB1	R	368	413	Right-handed alpha
Helix 11	AB2	R	416	430	Right-handed alpha
Helix 12	AB3	C	30	32	Right-handed 310
Helix 13	AB4	C	177	179	Right-handed 310
Helix 14	AB5	C	197	203	Right-handed 310
Helix 15	AB6	C	207	214	Right-handed alpha
Helix 16	AB7	C	221	225	Right-handed 310
Helix 17	AB8	C	264	268	Right-handed 310
Helix 18	AB9	D	62	69	Right-handed alpha
Helix 19	AC1	D	98	102	Right-handed 310
Helix 20	AC2	D	121	127	Right-handed alpha
Helix 21	AC3	E	20	25	Right-handed alpha
Helix 22	AC4	E	29	42	Right-handed alpha
Helix 23	AC5	E	102	120	Right-handed alpha
Helix 24	AC6	E	135	146	Right-handed alpha
Helix 25	AC7	E	160	166	Right-handed alpha
Helix 26	AC8	E	182	190	Right-handed alpha
Helix 27	AC9	E	195	206	Right-handed alpha
Helix 28	AD1	F	3	20	Right-handed alpha
Helix 29	AD2	F	49	57	Right-handed alpha
Helix 30	AD3	F	94	111	Right-handed alpha
Helix 31	AD4	F	162	173	Right-handed alpha
Helix 32	AD5	G	59	82	Right-handed alpha
Helix 33	AD6	G	138	153	Right-handed alpha
Helix 34	AD7	I	23	30	Right-handed alpha
Helix 35	AD8	I	35	46	Right-handed alpha
Helix 36	AD9	I	74	84	Right-handed alpha
Helix 37	AE1	I	102	112	Right-handed alpha
Helix 38	AE2	I	120	135	Right-handed alpha
Helix 39	AE3	J	27	39	Right-handed alpha
Helix 40	AE4	J	59	63	Right-handed 310
Helix 41	AE5	J	68	73	Right-handed alpha
Helix 42	AE6	J	90	97	Right-handed alpha
Helix 43	AE7	J	98	110	Right-handed alpha
Helix 44	AE8	J	113	121	Right-handed alpha
Helix 45	AE9	J	133	137	Right-handed 310
Helix 46	AF1	K	105	107	Right-handed 310
Helix 47	AF2	K	111	118	Right-handed alpha
Helix 48	AF3	L	56	61	Right-handed alpha
Helix 49	AF4	L	78	85	Right-handed 310
Helix 50	AF5	L	92	100	Right-handed alpha
Helix 51	AF6	L	129	139	Right-handed alpha
Helix 52	AF7	M	44	58	Right-handed alpha
Helix 53	AF8	M	110	123	Right-handed alpha
Helix 54	AF9	N	9	28	Right-handed alpha
Helix 55	AG1	N	34	54	Right-handed alpha
Helix 56	AG2	N	55	64	Right-handed alpha
Helix 57	AG3	N	79	86	Right-handed alpha
Helix 58	AG4	N	86	91	Right-handed alpha
Helix 59	AG5	O	6	22	Right-handed alpha
Helix 60	AG6	O	73	87	Right-handed alpha
Helix 61	AG7	O	105	117	Right-handed alpha
Helix 62	AG8	Q	7	21	Right-handed alpha
Helix 63	AG9	Q	25	30	Right-handed 310
Helix 64	AH1	Q	31	72	Right-handed alpha
Helix 65	AH2	Q	75	86	Right-handed alpha
Helix 66	AH3	Q	92	99	Right-handed alpha
Helix 67	AH4	Q	104	116	Right-handed alpha
Helix 68	AH5	S	13	25	Right-handed alpha
Helix 69	AH6	S	28	31	Right-handed 310
Helix 70	AH7	S	32	38	Right-handed alpha
Helix 71	AH8	S	43	61	Right-handed alpha
Helix 72	AH9	S	65	67	Right-handed 310
Helix 73	AI1	Z	16	26	Right-handed alpha
Helix 74	AI2	Z	40	50	Right-handed alpha
Helix 75	AI3	a	6	13	Right-handed alpha
Helix 76	AI4	a	56	59	Right-handed 310
Helix 77	AI5	a	100	105	Right-handed 310
Helix 78	AI6	a	108	113	Right-handed alpha
Helix 79	AI7	b	9	17	Right-handed alpha
Helix 80	AI8	d	8	16	Right-handed alpha
Helix 81	AI9	d	17	23	Right-handed alpha
Helix 82	AJ1	d	24	38	Right-handed alpha
Helix 83	AJ2	e	7	14	Right-handed alpha
Helix 84	AJ3	e	37	45	Right-handed alpha
Helix 85	AJ4	e	51	59	Right-handed alpha
Helix 86	AJ5	f	18	22	Right-handed 310
Helix 87	AJ6	f	29	33	Right-handed 310
Helix 88	AJ7	h	3	6	Right-handed 310
Helix 89	AJ8	h	14	21	Right-handed alpha
Helix 90	AJ9	h	35	47	Right-handed alpha
Helix 91	AK1	i	2	8	Right-handed alpha
Helix 92	AK2	i	9	35	Right-handed alpha
Helix 93	AK3	i	39	65	Right-handed alpha

There are 52 sheets in PDB entry 7AQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	59	62	first strand
Strand 2	R	45	51	anti-parallel
Strand 3	R	34	40	anti-parallel
Strand 4	R	21	28	anti-parallel
Strand 5	R	87	93	anti-parallel
Strand 6	R	99	107	anti-parallel
Strand 7	R	113	121	anti-parallel
Strand 8	R	128	132	anti-parallel
Strand 9	R	139	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	242	245	first strand
Strand 2	R	250	253	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	17	19	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	61	63	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	105	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	115	116	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	189	192	anti-parallel
Strand 3	C	141	142	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	167	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	181	185	anti-parallel
Strand 4	C	270	272	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	16	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	185	189	anti-parallel
Strand 4	D	168	180	anti-parallel
Strand 5	D	107	113	anti-parallel
Strand 6	D	199	204	anti-parallel
Strand 7	D	4	16	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	83	first strand
Strand 2	D	48	55	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	96	97	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	120	first strand
Strand 2	D	162	164	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	3	7	anti-parallel
Strand 3	E	123	126	parallel
Strand 4	E	192	194	parallel
Strand 5	E	152	156	parallel
Strand 6	E	173	177	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	67	first strand
Strand 2	F	87	91	anti-parallel
Strand 3	F	31	37	anti-parallel
Strand 4	F	153	158	anti-parallel
Strand 5	F	127	131	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	10	first strand
Strand 2	G	50	53	anti-parallel
Strand 3	G	44	47	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	17	first strand
Strand 2	G	24	29	anti-parallel
Strand 3	G	32	37	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	125	first strand
Strand 2	G	131	136	anti-parallel
Strand 3	G	84	91	anti-parallel
Strand 4	G	162	164	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	100	first strand
Strand 2	G	103	106	anti-parallel
Strand 3	G	114	116	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	14	first strand
Strand 2	I	53	58	anti-parallel
Strand 3	I	68	70	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	98	101	first strand
Strand 2	I	137	140	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	125	first strand
Strand 2	J	54	58	parallel
Strand 3	J	16	20	parallel
Strand 4	J	139	140	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	76	first strand
Strand 2	J	87	89	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	10	first strand
Strand 2	K	16	24	anti-parallel
Strand 3	K	38	46	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	87	anti-parallel
Strand 6	K	7	10	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	70	first strand
Strand 2	K	76	79	anti-parallel
Strand 3	a	71	78	anti-parallel
Strand 4	a	61	68	anti-parallel
Strand 5	a	43	54	anti-parallel
Strand 6	a	28	34	anti-parallel
Strand 7	a	84	91	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	102	103	first strand
Strand 2	K	121	122	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	110	111	first strand
Strand 2	L	127	128	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	122	125	first strand
Strand 2	L	142	145	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	64	66	first strand
Strand 2	M	102	106	anti-parallel
Strand 3	M	32	36	anti-parallel
Strand 4	M	129	133	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	43	first strand
Strand 2	M	89	97	anti-parallel
Strand 3	M	72	76	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	33	first strand
Strand 2	N	113	119	anti-parallel
Strand 3	N	99	106	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	70	72	first strand
Strand 2	N	77	78	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	52	57	first strand
Strand 2	O	40	45	anti-parallel
Strand 3	O	30	35	anti-parallel
Strand 4	O	94	96	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	6	first strand
Strand 2	S	101	109	anti-parallel
Strand 3	S	69	73	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	6	first strand
Strand 2	S	101	109	anti-parallel
Strand 3	S	76	78	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	82	86	first strand
Strand 2	S	94	98	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	63	64	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	20	27	anti-parallel
Strand 4	U	8	11	anti-parallel
Strand 5	U	68	70	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	43	44	first strand
Strand 2	U	56	57	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	81	82	first strand
Strand 2	U	93	94	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	30	31	first strand
Strand 2	V	44	47	anti-parallel
Strand 3	V	67	69	anti-parallel
Strand 4	V	59	61	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	38	39	first strand
Strand 2	V	73	79	anti-parallel
Strand 3	V	85	90	anti-parallel
Strand 4	V	54	55	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	13	17	first strand
Strand 2	X	25	29	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	33	34	first strand
Strand 2	X	49	50	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	34	38	first strand
Strand 2	Z	3	8	anti-parallel
Strand 3	Z	54	58	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	93	94	first strand
Strand 2	a	116	117	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	27	28	first strand
Strand 2	b	37	38	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	48	49	first strand
Strand 2	b	52	53	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	15	22	first strand
Strand 2	c	2	9	anti-parallel
Strand 3	c	41	47	anti-parallel
Strand 4	c	31	36	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	23	25	first strand
Strand 2	e	47	49	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	15	17	first strand
Strand 2	f	24	26	anti-parallel
Strand 3	f	34	35	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	3	6	first strand
Strand 2	g	11	14	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	18	23	first strand
Strand 2	g	91	100	anti-parallel
Strand 3	g	58	67	anti-parallel
Strand 4	g	32	35	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	71	76	first strand
Strand 2	g	83	88	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	8	11	first strand
Strand 2	h	25	30	anti-parallel
Strand 3	h	76	83	anti-parallel
Strand 4	h	51	59	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	63	66	first strand
Strand 2	h	69	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AQD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AQD