Analysis of interatomic Contacts of Structural Units in PDB entry:
7AQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AQF entry

There are 2 chains in PDB entry 7AQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2PRO 379
B
 TYR 7PRO 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7AQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 26Right-handed alpha
Helix 2
AA2
A
35 48Right-handed alpha
Helix 3
AA3
A
51 63Right-handed alpha
Helix 4
AA4
A
70 84Right-handed alpha
Helix 5
AA5
A
108 118Right-handed alpha
Helix 6
AA6
A
128 144Right-handed alpha
Helix 7
AA7
A
151 157Right-handed 310
Helix 8
AA8
A
180 184Right-handed 310
Helix 9
AA9
A
247 252Right-handed alpha
Helix 10
AB1
A
255 265Right-handed alpha
Helix 11
AB2
A
286 293Right-handed alpha
Helix 12
AB3
A
296 300Right-handed 310
Helix 13
AB4
B
8 27Right-handed alpha
Helix 14
AB5
B
35 50Right-handed alpha
Helix 15
AB6
B
51 63Right-handed alpha
Helix 16
AB7
B
70 83Right-handed alpha
Helix 17
AB8
B
108 118Right-handed alpha
Helix 18
AB9
B
128 144Right-handed alpha
Helix 19
AC1
B
151 157Right-handed 310
Helix 20
AC2
B
180 184Right-handed 310
Helix 21
AC3
B
229 231Right-handed 310
Helix 22
AC4
B
247 252Right-handed alpha
Helix 23
AC5
B
255 266Right-handed alpha
Helix 24
AC6
B
286 293Right-handed alpha
Helix 25
AC7
B
296 300Right-handed 310
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There are 6 sheets in PDB entry 7AQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
369 376anti-parallel
Strand 3
A
358 364anti-parallel
Strand 4
A
233 240anti-parallel
Strand 5
A
220 227anti-parallel
Strand 6
A
196 214anti-parallel
Strand 7
A
185 190anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
369 376anti-parallel
Strand 3
A
358 364anti-parallel
Strand 4
A
233 240anti-parallel
Strand 5
A
220 227anti-parallel
Strand 6
A
196 214anti-parallel
Strand 7
A
267 276anti-parallel
Strand 8
A
351 353parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
91 100parallel
Strand 3
A
163 172anti-parallel
Strand 4
A
319 328parallel
Strand 5
A
278 285anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
370 376anti-parallel
Strand 3
B
358 364anti-parallel
Strand 4
B
233 240anti-parallel
Strand 5
B
220 227anti-parallel
Strand 6
B
196 214anti-parallel
Strand 7
B
185 190anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
370 376anti-parallel
Strand 3
B
358 364anti-parallel
Strand 4
B
233 240anti-parallel
Strand 5
B
220 227anti-parallel
Strand 6
B
196 214anti-parallel
Strand 7
B
267 276anti-parallel
Strand 8
B
350 353parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
91 100parallel
Strand 3
B
163 172anti-parallel
Strand 4
B
319 328parallel
Strand 5
B
278 285anti-parallel
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