Analysis of interatomic Contacts of Structural Units in PDB entry:
7AQW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AQW entry

There are 13 chains in PDB entry 7AQW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	MET 1	LEU 589
M	MET 271	HIS 495
T	ASP 38	SER 121
c	GLY 13	HIS 88
g	ARG 31	LYS 105
i	GLY 2	MET 16
j	GLY 9	GLY 59
k	PRO 4	GLN 50
l	LYS 45	PRO 125
m	GLY 2	LEU 71
n	ALA 7	ASP 115
o	LYS 8	LYS 87
p	GLY 2	SER 94

There are 77 helices in PDB entry 7AQW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	2	17	Right-handed alpha
Helix 2	AA2	L	19	51	Right-handed alpha
Helix 3	AA3	L	79	104	Right-handed alpha
Helix 4	AA4	L	109	129	Right-handed alpha
Helix 5	AA5	L	132	152	Right-handed alpha
Helix 6	AA6	L	158	190	Right-handed alpha
Helix 7	AA7	L	193	200	Right-handed alpha
Helix 8	AA8	L	217	234	Right-handed alpha
Helix 9	AA9	L	240	245	Right-handed alpha
Helix 10	AB1	L	246	248	Right-handed 310
Helix 11	AB2	L	249	257	Right-handed alpha
Helix 12	AB3	L	263	272	Right-handed alpha
Helix 13	AB4	L	272	277	Right-handed alpha
Helix 14	AB5	L	279	301	Right-handed alpha
Helix 15	AB6	L	306	328	Right-handed alpha
Helix 16	AB7	L	330	345	Right-handed alpha
Helix 17	AB8	L	345	359	Right-handed alpha
Helix 18	AB9	L	364	368	Right-handed 310
Helix 19	AC1	L	375	391	Right-handed alpha
Helix 20	AC2	L	397	411	Right-handed alpha
Helix 21	AC3	L	413	443	Right-handed alpha
Helix 22	AC4	L	449	455	Right-handed alpha
Helix 23	AC5	L	460	463	Right-handed 310
Helix 24	AC6	L	464	487	Right-handed alpha
Helix 25	AC7	L	505	511	Right-handed alpha
Helix 26	AC8	L	519	537	Right-handed alpha
Helix 27	AC9	L	543	549	Right-handed alpha
Helix 28	AD1	L	549	561	Right-handed alpha
Helix 29	AD2	L	564	573	Right-handed alpha
Helix 30	AD3	L	573	584	Right-handed alpha
Helix 31	AD4	M	272	279	Right-handed alpha
Helix 32	AD5	M	279	299	Right-handed alpha
Helix 33	AD6	M	303	324	Right-handed alpha
Helix 34	AD7	M	327	359	Right-handed alpha
Helix 35	AD8	M	363	367	Right-handed 310
Helix 36	AD9	M	369	374	Right-handed alpha
Helix 37	AE1	M	374	389	Right-handed alpha
Helix 38	AE2	M	394	409	Right-handed alpha
Helix 39	AE3	M	411	437	Right-handed alpha
Helix 40	AE4	M	453	473	Right-handed alpha
Helix 41	AE5	M	474	479	Right-handed alpha
Helix 42	AE6	M	481	490	Right-handed alpha
Helix 43	AE7	T	42	56	Right-handed alpha
Helix 44	AE8	T	78	94	Right-handed alpha
Helix 45	AE9	T	98	103	Right-handed alpha
Helix 46	AF1	T	107	118	Right-handed alpha
Helix 47	AF2	c	14	18	Right-handed 310
Helix 48	AF3	c	32	58	Right-handed alpha
Helix 49	AF4	c	69	73	Right-handed 310
Helix 50	AF5	c	83	87	Right-handed 310
Helix 51	AF6	g	44	48	Right-handed 310
Helix 52	AF7	g	62	82	Right-handed alpha
Helix 53	AF8	g	88	93	Right-handed alpha
Helix 54	AF9	g	96	104	Right-handed alpha
Helix 55	AG1	i	3	16	Right-handed alpha
Helix 56	AG2	j	21	51	Right-handed alpha
Helix 57	AG3	k	5	16	Right-handed alpha
Helix 58	AG4	k	21	26	Right-handed alpha
Helix 59	AG5	k	27	31	Right-handed 310
Helix 60	AG6	k	34	50	Right-handed alpha
Helix 61	AG7	l	74	100	Right-handed alpha
Helix 62	AG8	l	101	105	Right-handed 310
Helix 63	AG9	l	112	118	Right-handed alpha
Helix 64	AH1	l	119	122	Right-handed 310
Helix 65	AH2	m	10	22	Right-handed alpha
Helix 66	AH3	m	23	27	Right-handed 310
Helix 67	AH4	m	30	39	Right-handed alpha
Helix 68	AH5	m	43	63	Right-handed alpha
Helix 69	AH6	n	15	35	Right-handed alpha
Helix 70	AH7	n	37	56	Right-handed alpha
Helix 71	AH8	n	60	79	Right-handed alpha
Helix 72	AH9	o	13	21	Right-handed alpha
Helix 73	AI1	o	30	44	Right-handed alpha
Helix 74	AI2	o	52	86	Right-handed alpha
Helix 75	AI3	p	26	63	Right-handed alpha
Helix 76	AI4	p	65	70	Right-handed alpha
Helix 77	AI5	p	70	80	Right-handed alpha

There are 4 sheets in PDB entry 7AQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	71	78	first strand
Strand 2	L	57	66	anti-parallel
Strand 3	c	59	60	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	207	210	first strand
Strand 2	L	213	216	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	448	449	first strand
Strand 2	n	106	107	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	10	11	first strand
Strand 2	j	16	17	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AQW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AQW