Analysis of interatomic Contacts of Structural Units in PDB entry:
7ARJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ARJ entry

There are 5 chains in PDB entry 7ARJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 TYR 2ARG 397
E
 PRO 4SER 412
F
 ILE 4SER 228
D
 LYS 3SER 228
V
 CYS 1LEU 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 7ARJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
22 28Right-handed alpha
Helix 2
AA2
C
28 57Right-handed alpha
Helix 3
AA3
C
133 137Right-handed 310
Helix 4
AA4
C
148 153Right-handed alpha
Helix 5
AA5
C
248 252Right-handed 310
Helix 6
AA6
C
255 271Right-handed alpha
Helix 7
AA7
C
272 293Right-handed alpha
Helix 8
AA8
C
294 304Right-handed alpha
Helix 9
AA9
C
306 312Right-handed alpha
Helix 10
AB1
C
312 318Right-handed alpha
Helix 11
AB2
C
319 339Right-handed alpha
Helix 12
AB3
C
361 379Right-handed alpha
Helix 13
AB4
C
380 389Right-handed alpha
Helix 14
AB5
E
12 17Right-handed 310
Helix 15
AB6
E
21 24Right-handed 310
Helix 16
AB7
E
25 59Right-handed alpha
Helix 17
AB8
E
79 84Right-handed alpha
Helix 18
AB9
E
122 126Right-handed 310
Helix 19
AC1
E
128 132Right-handed 310
Helix 20
AC2
E
151 159Right-handed alpha
Helix 21
AC3
E
208 215Right-handed alpha
Helix 22
AC4
E
239 243Right-handed 310
Helix 23
AC5
E
254 259Right-handed alpha
Helix 24
AC6
E
260 268Right-handed alpha
Helix 25
AC7
E
271 284Right-handed alpha
Helix 26
AC8
E
284 298Right-handed alpha
Helix 27
AC9
E
298 309Right-handed alpha
Helix 28
AD1
E
311 344Right-handed alpha
Helix 29
AD2
E
344 357Right-handed alpha
Helix 30
AD3
E
377 395Right-handed alpha
Helix 31
AD4
E
396 402Right-handed alpha
Helix 32
AD5
F
47 55Right-handed alpha
Helix 33
AD6
F
77 88Right-handed alpha
Helix 34
AD7
F
103 109Right-handed alpha
Helix 35
AD8
F
109 115Right-handed alpha
Helix 36
AD9
F
121 134Right-handed alpha
Helix 37
AE1
F
147 160Right-handed alpha
Helix 38
AE2
F
177 184Right-handed alpha
Helix 39
AE3
F
184 191Right-handed alpha
Helix 40
AE4
D
47 55Right-handed alpha
Helix 41
AE5
D
83 88Right-handed alpha
Helix 42
AE6
D
103 109Right-handed alpha
Helix 43
AE7
D
109 115Right-handed alpha
Helix 44
AE8
D
121 125Right-handed 310
Helix 45
AE9
D
180 184Right-handed 310
Helix 46
AF1
D
189 193Right-handed 310
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There are 9 sheets in PDB entry 7ARJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 96first strand
Strand 2
C
221 224anti-parallel
Strand 3
C
66 69anti-parallel
Strand 4
C
245 247anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 104first strand
Strand 2
C
111 117anti-parallel
Strand 3
C
202 204parallel
Strand 4
C
143 147anti-parallel
Strand 5
C
180 190parallel
Strand 6
C
161 166anti-parallel
Strand 7
C
98 104anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
165 166first strand
Strand 2
E
187 189anti-parallel
Strand 3
E
147 150parallel
Strand 4
E
204 207anti-parallel
Strand 5
E
115 118parallel
Strand 6
E
91 99anti-parallel
Strand 7
E
223 228anti-parallel
Strand 8
E
66 69anti-parallel
Strand 9
E
250 252anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
103 104first strand
Strand 2
E
168 170anti-parallel
Strand 3
E
183 184anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 7first strand
Strand 2
F
31 32anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 38first strand
Strand 2
F
199 202parallel
Strand 3
F
166 170parallel
Strand 4
F
89 92parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
6 7anti-parallel
Strand 3
D
67 68anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 16first strand
Strand 2
D
21 25anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 91first strand
Strand 2
D
166 168parallel
Strand 3
D
199 203parallel
Strand 4
D
38 41parallel
Strand 5
D
216 217parallel
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