Analysis of interatomic Contacts of Structural Units in PDB entry:
7AUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7AUW entry

There are 3 chains in PDB entry 7AUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 62	SER 593
B	PRO 30	PRO 383
C	ASN 62	MET 512

There are 44 helices in PDB entry 7AUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	70	Right-handed 310
Helix 2	AA2	A	84	102	Right-handed alpha
Helix 3	AA3	A	146	159	Right-handed alpha
Helix 4	AA4	A	162	166	Right-handed 310
Helix 5	AA5	A	168	171	Right-handed 310
Helix 6	AA6	A	177	180	Right-handed 310
Helix 7	AA7	A	185	189	Right-handed 310
Helix 8	AA8	A	228	232	Right-handed 310
Helix 9	AA9	A	242	253	Right-handed alpha
Helix 10	AB1	A	271	275	Right-handed 310
Helix 11	AB2	A	437	441	Right-handed 310
Helix 12	AB3	A	484	488	Right-handed 310
Helix 13	AB4	A	507	511	Right-handed 310
Helix 14	AB5	A	535	540	Right-handed alpha
Helix 15	AB6	A	565	569	Right-handed alpha
Helix 16	AB7	A	589	592	Right-handed 310
Helix 17	AB8	B	41	59	Right-handed alpha
Helix 18	AB9	B	79	81	Right-handed 310
Helix 19	AC1	B	103	107	Right-handed 310
Helix 20	AC2	B	111	114	Right-handed 310
Helix 21	AC3	B	146	154	Right-handed alpha
Helix 22	AC4	B	165	183	Right-handed alpha
Helix 23	AC5	C	66	70	Right-handed 310
Helix 24	AC6	C	84	102	Right-handed alpha
Helix 25	AC7	C	146	159	Right-handed alpha
Helix 26	AC8	C	162	166	Right-handed 310
Helix 27	AC9	C	168	171	Right-handed 310
Helix 28	AD1	C	177	180	Right-handed 310
Helix 29	AD2	C	185	189	Right-handed 310
Helix 30	AD3	C	228	232	Right-handed 310
Helix 31	AD4	C	242	253	Right-handed alpha
Helix 32	AD5	C	271	275	Right-handed 310
Helix 33	AD6	C	437	441	Right-handed 310
Helix 34	AD7	C	484	488	Right-handed 310
Helix 35	AD8	C	507	511	Right-handed 310
Helix 36	AD9	C	535	540	Right-handed alpha
Helix 37	AE1	C	565	569	Right-handed alpha
Helix 38	AE2	C	589	592	Right-handed 310
Helix 39	AE3	D	41	59	Right-handed alpha
Helix 40	AE4	D	103	107	Right-handed 310
Helix 41	AE5	D	111	114	Right-handed 310
Helix 42	AE6	D	146	154	Right-handed alpha
Helix 43	AE7	D	165	183	Right-handed alpha
Helix 44	AE8	D	223	227	Right-handed 310

There are 27 sheets in PDB entry 7AUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	196	197	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	74	79	parallel
Strand 3	A	115	119	parallel
Strand 4	A	135	140	parallel
Strand 5	A	124	126	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	224	226	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	265	first strand
Strand 2	A	414	423	anti-parallel
Strand 3	A	311	315	anti-parallel
Strand 4	A	286	288	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	265	first strand
Strand 2	A	414	423	anti-parallel
Strand 3	A	339	347	anti-parallel
Strand 4	A	385	392	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	398	405	anti-parallel
Strand 3	A	354	361	anti-parallel
Strand 4	A	370	377	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	579	587	anti-parallel
Strand 3	A	495	501	anti-parallel
Strand 4	A	514	519	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	460	466	anti-parallel
Strand 3	A	453	454	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	460	466	anti-parallel
Strand 3	A	472	479	anti-parallel
Strand 4	A	558	564	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	544	first strand
Strand 2	A	550	553	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	63	78	anti-parallel
Strand 3	B	82	97	anti-parallel
Strand 4	B	116	127	anti-parallel
Strand 5	B	132	144	anti-parallel
Strand 6	B	304	309	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	197	200	anti-parallel
Strand 3	B	204	214	anti-parallel
Strand 4	B	188	195	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	197	200	anti-parallel
Strand 3	B	204	214	anti-parallel
Strand 4	B	235	242	anti-parallel
Strand 5	B	258	265	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	346	first strand
Strand 2	B	358	360	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	196	197	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	108	first strand
Strand 2	C	74	79	parallel
Strand 3	C	115	119	parallel
Strand 4	C	135	140	parallel
Strand 5	C	124	126	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	224	226	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	265	first strand
Strand 2	C	414	423	anti-parallel
Strand 3	C	311	315	anti-parallel
Strand 4	C	286	288	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	265	first strand
Strand 2	C	414	423	anti-parallel
Strand 3	C	339	347	anti-parallel
Strand 4	C	385	392	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	328	first strand
Strand 2	C	398	405	anti-parallel
Strand 3	C	354	361	anti-parallel
Strand 4	C	370	377	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	579	587	anti-parallel
Strand 3	C	495	501	anti-parallel
Strand 4	C	514	519	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	449	first strand
Strand 2	C	460	466	anti-parallel
Strand 3	C	453	454	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	449	first strand
Strand 2	C	460	466	anti-parallel
Strand 3	C	472	479	anti-parallel
Strand 4	C	558	564	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	544	first strand
Strand 2	C	550	553	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	63	75	anti-parallel
Strand 3	D	85	97	anti-parallel
Strand 4	D	116	127	anti-parallel
Strand 5	D	132	144	anti-parallel
Strand 6	D	305	309	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	197	200	anti-parallel
Strand 3	D	204	214	anti-parallel
Strand 4	D	188	195	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	197	200	anti-parallel
Strand 3	D	204	214	anti-parallel
Strand 4	D	235	242	anti-parallel
Strand 5	D	258	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7AUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7AUW