Analysis of interatomic Contacts of Structural Units in PDB entry:
7AVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AVL entry

There are 2 chains in PDB entry 7AVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 563ASN 1044
B
 GLU 565VAL 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7AVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
563 568Right-handed alpha
Helix 2
AA2
A
605 614Right-handed alpha
Helix 3
AA3
A
620 631Right-handed alpha
Helix 4
AA4
A
632 634Right-handed 310
Helix 5
AA5
A
636 649Right-handed alpha
Helix 6
AA6
A
656 665Right-handed alpha
Helix 7
AA7
A
671 681Right-handed alpha
Helix 8
AA8
A
681 700Right-handed alpha
Helix 9
AA9
A
701 707Right-handed alpha
Helix 10
AB1
A
707 720Right-handed alpha
Helix 11
AB2
A
723 746Right-handed alpha
Helix 12
AB3
A
770 774Right-handed 310
Helix 13
AB4
A
780 799Right-handed alpha
Helix 14
AB5
A
800 811Right-handed 310
Helix 15
AB6
A
813 818Right-handed alpha
Helix 16
AB7
A
818 841Right-handed alpha
Helix 17
AB8
A
844 865Right-handed alpha
Helix 18
AB9
A
867 880Right-handed alpha
Helix 19
AC1
A
880 885Right-handed alpha
Helix 20
AC2
A
886 892Right-handed alpha
Helix 21
AC3
A
894 907Right-handed alpha
Helix 22
AC4
A
908 922Right-handed alpha
Helix 23
AC5
A
930 944Right-handed alpha
Helix 24
AC6
A
958 973Right-handed alpha
Helix 25
AC7
A
984 993Right-handed alpha
Helix 26
AC8
A
1001 1017Right-handed alpha
Helix 27
AC9
B
605 614Right-handed alpha
Helix 28
AD1
B
620 631Right-handed alpha
Helix 29
AD2
B
632 634Right-handed 310
Helix 30
AD3
B
636 649Right-handed alpha
Helix 31
AD4
B
656 665Right-handed alpha
Helix 32
AD5
B
671 681Right-handed alpha
Helix 33
AD6
B
681 700Right-handed alpha
Helix 34
AD7
B
701 707Right-handed alpha
Helix 35
AD8
B
707 720Right-handed alpha
Helix 36
AD9
B
723 744Right-handed alpha
Helix 37
AE1
B
770 774Right-handed 310
Helix 38
AE2
B
780 799Right-handed alpha
Helix 39
AE3
B
800 811Right-handed 310
Helix 40
AE4
B
813 818Right-handed alpha
Helix 41
AE5
B
818 841Right-handed alpha
Helix 42
AE6
B
844 865Right-handed alpha
Helix 43
AE7
B
867 880Right-handed alpha
Helix 44
AE8
B
880 885Right-handed alpha
Helix 45
AE9
B
886 892Right-handed alpha
Helix 46
AF1
B
894 907Right-handed alpha
Helix 47
AF2
B
908 922Right-handed alpha
Helix 48
AF3
B
930 944Right-handed alpha
Helix 49
AF4
B
958 973Right-handed alpha
Helix 50
AF5
B
984 993Right-handed alpha
Helix 51
AF6
B
1001 1017Right-handed alpha
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There are 2 sheets in PDB entry 7AVL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 588first strand
Strand 2
A
601 604anti-parallel
Strand 3
A
953 957anti-parallel
Strand 4
A
947 950anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
586 588first strand
Strand 2
B
601 604anti-parallel
Strand 3
B
953 957anti-parallel
Strand 4
B
947 950anti-parallel
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