Analysis of interatomic Contacts of Structural Units in PDB entry:
7AVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7AVM entry

There is 1 chain in PDB entry 7AVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 38GLN 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7AVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 48Right-handed alpha
Helix 2
AA2
A
54 73Right-handed alpha
Helix 3
AA3
A
96 101Right-handed alpha
Helix 4
AA4
A
101 113Right-handed alpha
Helix 5
AA5
A
149 167Right-handed alpha
Helix 6
AA6
A
175 182Right-handed alpha
Helix 7
AA7
A
186 190Right-handed 310
Helix 8
AA8
A
192 204Right-handed alpha
Helix 9
AA9
A
217 221Right-handed 310
Helix 10
AB1
A
246 258Right-handed alpha
Helix 11
AB2
A
266 270Right-handed 310
Helix 12
AB3
A
326 330Right-handed 310
Helix 13
AB4
A
344 348Right-handed 310
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There are 4 sheets in PDB entry 7AVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
272 277anti-parallel
Strand 3
A
318 322parallel
Strand 4
A
302 306anti-parallel
Strand 5
A
287 295anti-parallel
Strand 6
A
129 131anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
272 277anti-parallel
Strand 3
A
318 322parallel
Strand 4
A
302 306anti-parallel
Strand 5
A
287 295anti-parallel
Strand 6
A
260 264anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
233 236anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
335 338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il