Analysis of interatomic Contacts of Structural Units in PDB entry:
7B00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7B00 entry

There are 2 chains in PDB entry 7B00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 41GLU 497
B
 THR 61ALA 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 7B00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 54Right-handed alpha
Helix 2
AA2
A
63 68Right-handed alpha
Helix 3
AA3
A
77 100Right-handed alpha
Helix 4
AA4
A
106 112Right-handed alpha
Helix 5
AA5
A
115 126Right-handed alpha
Helix 6
AA6
A
139 148Right-handed alpha
Helix 7
AA7
A
157 160Right-handed 310
Helix 8
AA8
A
161 178Right-handed alpha
Helix 9
AA9
A
181 186Right-handed alpha
Helix 10
AB1
A
187 190Right-handed 310
Helix 11
AB2
A
191 212Right-handed alpha
Helix 12
AB3
A
255 260Right-handed alpha
Helix 13
AB4
A
272 289Right-handed alpha
Helix 14
AB5
A
301 309Right-handed alpha
Helix 15
AB6
A
319 324Right-handed alpha
Helix 16
AB7
A
337 345Right-handed alpha
Helix 17
AB8
A
364 377Right-handed alpha
Helix 18
AB9
A
378 380Right-handed 310
Helix 19
AC1
A
384 396Right-handed alpha
Helix 20
AC2
A
397 412Right-handed alpha
Helix 21
AC3
A
425 434Right-handed alpha
Helix 22
AC4
A
434 439Right-handed alpha
Helix 23
AC5
A
439 444Right-handed alpha
Helix 24
AC6
A
451 456Right-handed alpha
Helix 25
AC7
A
458 463Right-handed alpha
Helix 26
AC8
A
476 491Right-handed alpha
Helix 27
AC9
B
65 73Right-handed alpha
Helix 28
AD1
B
74 106Right-handed alpha
Helix 29
AD2
B
116 120Right-handed 310
Helix 30
AD3
B
128 134Right-handed alpha
Helix 31
AD4
B
139 145Right-handed 310
Helix 32
AD5
B
146 151Right-handed alpha
Helix 33
AD6
B
185 197Right-handed alpha
Helix 34
AD7
B
223 228Right-handed alpha
Helix 35
AD8
B
228 239Right-handed alpha
Helix 36
AD9
B
249 252Right-handed 310
Helix 37
AE1
B
254 270Right-handed alpha
Helix 38
AE2
B
283 291Right-handed alpha
Helix 39
AE3
B
310 326Right-handed alpha
Helix 40
AE4
B
345 347Right-handed 310
Helix 41
AE5
B
348 357Right-handed alpha
Helix 42
AE6
B
403 406Right-handed 310
Helix 43
AE7
B
407 412Right-handed alpha
Helix 44
AE8
B
418 427Right-handed alpha
Helix 45
AE9
B
433 438Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7B00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
364 366parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
204 206parallel
Strand 3
B
244 247parallel
Strand 4
B
275 278parallel
Strand 5
B
298 300parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
174 175anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 442first strand
Strand 2
B
449 455anti-parallel
Strand 3
B
461 467anti-parallel
Strand 4
B
519 525anti-parallel
Strand 5
B
491 497anti-parallel
Strand 6
B
507 509anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il