Analysis of interatomic Contacts of Structural Units in PDB entry:
7B0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7B0D entry

There are 4 chains in PDB entry 7B0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 0THR 184
A
 ASN 186ASN 367
B
 ASP 0THR 184
B
 ASN 186ASN 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 7B0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 29Right-handed alpha
Helix 2
AA2
A
34 49Right-handed alpha
Helix 3
AA3
A
58 70Right-handed alpha
Helix 4
AA4
A
85 94Right-handed alpha
Helix 5
AA5
A
112 120Right-handed 310
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
138 150Right-handed alpha
Helix 8
AA8
A
200 211Right-handed alpha
Helix 9
AA9
A
231 243Right-handed alpha
Helix 10
AB1
A
244 264Right-handed alpha
Helix 11
AB2
A
290 301Right-handed alpha
Helix 12
AB3
A
312 320Right-handed 310
Helix 13
AB4
A
328 336Right-handed alpha
Helix 14
AB5
A
348 367Right-handed alpha
Helix 15
AB6
B
6 29Right-handed alpha
Helix 16
AB7
B
34 49Right-handed alpha
Helix 17
AB8
B
58 70Right-handed alpha
Helix 18
AB9
B
85 94Right-handed alpha
Helix 19
AC1
B
112 120Right-handed 310
Helix 20
AC2
B
131 135Right-handed 310
Helix 21
AC3
B
138 150Right-handed alpha
Helix 22
AC4
B
200 211Right-handed alpha
Helix 23
AC5
B
231 243Right-handed alpha
Helix 24
AC6
B
244 264Right-handed alpha
Helix 25
AC7
B
290 301Right-handed alpha
Helix 26
AC8
B
312 315Right-handed 310
Helix 27
AC9
B
316 321Right-handed alpha
Helix 28
AD1
B
328 336Right-handed alpha
Helix 29
AD2
B
348 367Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7B0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
152 156parallel
Strand 5
A
124 128parallel
Strand 6
A
77 81parallel
Strand 7
A
98 102parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
164 165anti-parallel
Strand 3
A
277 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
338 341anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
176 180anti-parallel
Strand 4
B
152 156parallel
Strand 5
B
124 128parallel
Strand 6
B
77 81parallel
Strand 7
B
98 102parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
164 165anti-parallel
Strand 3
B
277 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
338 341anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il