Analysis of interatomic Contacts of Structural Units in PDB entry:
7B0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7B0J entry

There are 4 chains in PDB entry 7B0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 17MET 753
B
 ARG 17MET 753
C
 ARG 17MET 753
D
 ARG 17MET 753
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are156 helices in PDB entry 7B0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 43Right-handed alpha
Helix 2
AA2
A
44 54Right-handed alpha
Helix 3
AA3
A
73 80Right-handed alpha
Helix 4
AA4
A
82 92Right-handed alpha
Helix 5
AA5
A
98 106Right-handed alpha
Helix 6
AA6
A
108 116Right-handed alpha
Helix 7
AA7
A
144 153Right-handed alpha
Helix 8
AA8
A
154 165Right-handed alpha
Helix 9
AA9
A
188 204Right-handed alpha
Helix 10
AB1
A
205 212Right-handed alpha
Helix 11
AB2
A
215 234Right-handed alpha
Helix 12
AB3
A
237 257Right-handed alpha
Helix 13
AB4
A
261 270Right-handed alpha
Helix 14
AB5
A
286 295Right-handed alpha
Helix 15
AB6
A
297 302Right-handed alpha
Helix 16
AB7
A
303 316Right-handed alpha
Helix 17
AB8
A
325 339Right-handed alpha
Helix 18
AB9
A
339 350Right-handed alpha
Helix 19
AC1
A
361 383Right-handed alpha
Helix 20
AC2
A
400 423Right-handed alpha
Helix 21
AC3
A
426 432Right-handed alpha
Helix 22
AC4
A
432 457Right-handed alpha
Helix 23
AC5
A
464 468Right-handed 310
Helix 24
AC6
A
472 491Right-handed alpha
Helix 25
AC7
A
492 497Right-handed 310
Helix 26
AC8
A
502 512Right-handed alpha
Helix 27
AC9
A
512 539Right-handed alpha
Helix 28
AD1
A
540 542Right-handed 310
Helix 29
AD2
A
563 574Right-handed alpha
Helix 30
AD3
A
575 577Right-handed 310
Helix 31
AD4
A
580 585Right-handed 310
Helix 32
AD5
A
590 610Right-handed alpha
Helix 33
AD6
A
611 628Right-handed alpha
Helix 34
AD7
A
630 645Right-handed alpha
Helix 35
AD8
A
654 659Right-handed alpha
Helix 36
AD9
A
666 674Right-handed alpha
Helix 37
AE1
A
696 721Right-handed alpha
Helix 38
AE2
A
722 727Right-handed alpha
Helix 39
AE3
A
731 752Right-handed alpha
Helix 40
AE4
B
30 43Right-handed alpha
Helix 41
AE5
B
44 54Right-handed alpha
Helix 42
AE6
B
73 80Right-handed alpha
Helix 43
AE7
B
82 92Right-handed alpha
Helix 44
AE8
B
98 106Right-handed alpha
Helix 45
AE9
B
108 116Right-handed alpha
Helix 46
AF1
B
144 153Right-handed alpha
Helix 47
AF2
B
154 165Right-handed alpha
Helix 48
AF3
B
188 204Right-handed alpha
Helix 49
AF4
B
205 212Right-handed alpha
Helix 50
AF5
B
215 234Right-handed alpha
Helix 51
AF6
B
237 257Right-handed alpha
Helix 52
AF7
B
261 270Right-handed alpha
Helix 53
AF8
B
286 295Right-handed alpha
Helix 54
AF9
B
297 302Right-handed alpha
Helix 55
AG1
B
303 316Right-handed alpha
Helix 56
AG2
B
325 339Right-handed alpha
Helix 57
AG3
B
339 350Right-handed alpha
Helix 58
AG4
B
361 383Right-handed alpha
Helix 59
AG5
B
400 423Right-handed alpha
Helix 60
AG6
B
426 432Right-handed alpha
Helix 61
AG7
B
432 457Right-handed alpha
Helix 62
AG8
B
464 468Right-handed 310
Helix 63
AG9
B
472 491Right-handed alpha
Helix 64
AH1
B
492 497Right-handed 310
Helix 65
AH2
B
502 512Right-handed alpha
Helix 66
AH3
B
512 539Right-handed alpha
Helix 67
AH4
B
540 542Right-handed 310
Helix 68
AH5
B
563 574Right-handed alpha
Helix 69
AH6
B
575 577Right-handed 310
Helix 70
AH7
B
580 585Right-handed 310
Helix 71
AH8
B
590 610Right-handed alpha
Helix 72
AH9
B
611 628Right-handed alpha
Helix 73
AI1
B
630 645Right-handed alpha
Helix 74
AI2
B
654 659Right-handed alpha
Helix 75
AI3
B
666 674Right-handed alpha
Helix 76
AI4
B
696 721Right-handed alpha
Helix 77
AI5
B
722 727Right-handed alpha
Helix 78
AI6
B
731 752Right-handed alpha
Helix 79
AI7
C
30 43Right-handed alpha
Helix 80
AI8
C
44 54Right-handed alpha
Helix 81
AI9
C
73 80Right-handed alpha
Helix 82
AJ1
C
82 92Right-handed alpha
Helix 83
AJ2
C
98 106Right-handed alpha
Helix 84
AJ3
C
108 116Right-handed alpha
Helix 85
AJ4
C
144 153Right-handed alpha
Helix 86
AJ5
C
154 165Right-handed alpha
Helix 87
AJ6
C
188 204Right-handed alpha
Helix 88
AJ7
C
205 212Right-handed alpha
Helix 89
AJ8
C
215 234Right-handed alpha
Helix 90
AJ9
C
237 257Right-handed alpha
Helix 91
AK1
C
261 270Right-handed alpha
Helix 92
AK2
C
286 295Right-handed alpha
Helix 93
AK3
C
297 302Right-handed alpha
Helix 94
AK4
C
303 316Right-handed alpha
Helix 95
AK5
C
325 339Right-handed alpha
Helix 96
AK6
C
339 350Right-handed alpha
Helix 97
AK7
C
361 383Right-handed alpha
Helix 98
AK8
C
400 423Right-handed alpha
Helix 99
AK9
C
426 432Right-handed alpha
Helix 100
AL1
C
432 457Right-handed alpha
Helix 101
AL2
C
464 468Right-handed 310
Helix 102
AL3
C
472 491Right-handed alpha
Helix 103
AL4
C
492 497Right-handed 310
Helix 104
AL5
C
502 512Right-handed alpha
Helix 105
AL6
C
512 539Right-handed alpha
Helix 106
AL7
C
540 542Right-handed 310
Helix 107
AL8
C
563 574Right-handed alpha
Helix 108
AL9
C
575 577Right-handed 310
Helix 109
AM1
C
580 585Right-handed 310
Helix 110
AM2
C
590 610Right-handed alpha
Helix 111
AM3
C
611 628Right-handed alpha
Helix 112
AM4
C
630 645Right-handed alpha
Helix 113
AM5
C
654 659Right-handed alpha
Helix 114
AM6
C
666 674Right-handed alpha
Helix 115
AM7
C
696 721Right-handed alpha
Helix 116
AM8
C
722 727Right-handed alpha
Helix 117
AM9
C
731 752Right-handed alpha
Helix 118
AN1
D
30 43Right-handed alpha
Helix 119
AN2
D
44 54Right-handed alpha
Helix 120
AN3
D
73 80Right-handed alpha
Helix 121
AN4
D
82 92Right-handed alpha
Helix 122
AN5
D
98 106Right-handed alpha
Helix 123
AN6
D
108 116Right-handed alpha
Helix 124
AN7
D
144 153Right-handed alpha
Helix 125
AN8
D
154 165Right-handed alpha
Helix 126
AN9
D
188 204Right-handed alpha
Helix 127
AO1
D
205 212Right-handed alpha
Helix 128
AO2
D
215 234Right-handed alpha
Helix 129
AO3
D
237 257Right-handed alpha
Helix 130
AO4
D
261 270Right-handed alpha
Helix 131
AO5
D
286 295Right-handed alpha
Helix 132
AO6
D
297 302Right-handed alpha
Helix 133
AO7
D
303 316Right-handed alpha
Helix 134
AO8
D
325 339Right-handed alpha
Helix 135
AO9
D
339 350Right-handed alpha
Helix 136
AP1
D
361 383Right-handed alpha
Helix 137
AP2
D
400 423Right-handed alpha
Helix 138
AP3
D
426 432Right-handed alpha
Helix 139
AP4
D
432 457Right-handed alpha
Helix 140
AP5
D
464 468Right-handed 310
Helix 141
AP6
D
472 491Right-handed alpha
Helix 142
AP7
D
492 497Right-handed 310
Helix 143
AP8
D
502 512Right-handed alpha
Helix 144
AP9
D
512 539Right-handed alpha
Helix 145
AQ1
D
540 542Right-handed 310
Helix 146
AQ2
D
563 574Right-handed alpha
Helix 147
AQ3
D
575 577Right-handed 310
Helix 148
AQ4
D
580 585Right-handed 310
Helix 149
AQ5
D
590 610Right-handed alpha
Helix 150
AQ6
D
611 628Right-handed alpha
Helix 151
AQ7
D
630 645Right-handed alpha
Helix 152
AQ8
D
654 659Right-handed alpha
Helix 153
AQ9
D
666 674Right-handed alpha
Helix 154
AR1
D
696 721Right-handed alpha
Helix 155
AR2
D
722 727Right-handed alpha
Helix 156
AR3
D
731 752Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7B0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
70 72anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il