Analysis of interatomic Contacts of Structural Units in PDB entry:
7B3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7B3B entry

There are 6 chains in PDB entry 7B3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 31THR 929
B
 GLU 77ALA 191
C
 SER 1MET 62
P
 C 6 G 12
P
 U 14 G 15
T
 U 7 G 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 7B3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
123 133Right-handed alpha
Helix 2
AA2
A
139 149Right-handed alpha
Helix 3
AA3
A
153 159Right-handed alpha
Helix 4
AA4
A
170 200Right-handed alpha
Helix 5
AA5
A
206 210Right-handed 310
Helix 6
AA6
A
234 248Right-handed alpha
Helix 7
AA7
A
249 260Right-handed 310
Helix 8
AA8
A
275 287Right-handed alpha
Helix 9
AA9
A
297 301Right-handed 310
Helix 10
AB1
A
303 319Right-handed alpha
Helix 11
AB2
A
368 377Right-handed alpha
Helix 12
AB3
A
377 384Right-handed alpha
Helix 13
AB4
A
416 426Right-handed alpha
Helix 14
AB5
A
447 455Right-handed alpha
Helix 15
AB6
A
456 459Right-handed 310
Helix 16
AB7
A
465 479Right-handed alpha
Helix 17
AB8
A
489 493Right-handed 310
Helix 18
AB9
A
505 509Right-handed 310
Helix 19
AC1
A
511 519Right-handed alpha
Helix 20
AC2
A
520 532Right-handed alpha
Helix 21
AC3
A
561 581Right-handed alpha
Helix 22
AC4
A
596 606Right-handed alpha
Helix 23
AC5
A
621 626Right-handed alpha
Helix 24
AC6
A
627 640Right-handed alpha
Helix 25
AC7
A
647 662Right-handed alpha
Helix 26
AC8
A
686 710Right-handed alpha
Helix 27
AC9
A
717 733Right-handed alpha
Helix 28
AD1
A
738 752Right-handed alpha
Helix 29
AD2
A
768 773Right-handed alpha
Helix 30
AD3
A
778 789Right-handed alpha
Helix 31
AD4
A
795 799Right-handed 310
Helix 32
AD5
A
833 842Right-handed alpha
Helix 33
AD6
A
853 867Right-handed alpha
Helix 34
AD7
A
868 872Right-handed 310
Helix 35
AD8
A
874 896Right-handed alpha
Helix 36
AD9
A
912 917Right-handed alpha
Helix 37
AE1
A
918 924Right-handed alpha
Helix 38
AE2
B
78 97Right-handed alpha
Helix 39
AE3
B
99 110Right-handed alpha
Helix 40
AE4
B
118 125Right-handed alpha
Helix 41
AE5
B
134 142Right-handed alpha
Helix 42
AE6
B
176 180Right-handed 310
Helix 43
AE7
C
2 20Right-handed alpha
Helix 44
AE8
C
21 24Right-handed 310
Helix 45
AE9
C
25 41Right-handed alpha
Helix 46
AF1
C
44 62Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 7B3B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
43 49anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
223 224anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
338 348anti-parallel
Strand 3
A
327 335anti-parallel
Strand 4
B
115 116anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
539 544anti-parallel
Strand 3
A
666 668parallel
Strand 4
A
672 675anti-parallel
Strand 5
A
397 400anti-parallel
Strand 6
A
386 390anti-parallel
Strand 7
B
127 132parallel
Strand 8
B
184 190anti-parallel
Strand 9
B
152 160anti-parallel
Strand 10
B
146 149anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
843 844anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 757first strand
Strand 2
A
762 767anti-parallel
Strand 3
A
612 616anti-parallel
Strand 4
A
800 802anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
815 822first strand
Strand 2
A
825 832anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il