Analysis of interatomic Contacts of Structural Units in PDB entry:
7B54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7B54 entry

There is 1 chain in PDB entry 7B54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MET 1LEU 1985
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 7B54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
10 16Right-handed alpha
Helix 2
AA2
X
22 29Right-handed alpha
Helix 3
AA3
X
36 40Right-handed 310
Helix 4
AA4
X
50 54Right-handed 310
Helix 5
AA5
X
99 105Right-handed alpha
Helix 6
AA6
X
107 112Right-handed alpha
Helix 7
AA7
X
120 142Right-handed alpha
Helix 8
AA8
X
149 168Right-handed alpha
Helix 9
AA9
X
176 194Right-handed alpha
Helix 10
AB1
X
208 218Right-handed alpha
Helix 11
AB2
X
218 228Right-handed alpha
Helix 12
AB3
X
274 300Right-handed alpha
Helix 13
AB4
X
316 349Right-handed alpha
Helix 14
AB5
X
368 377Right-handed alpha
Helix 15
AB6
X
572 575Right-handed 310
Helix 16
AB7
X
582 586Right-handed 310
Helix 17
AB8
X
609 632Right-handed alpha
Helix 18
AB9
X
641 661Right-handed alpha
Helix 19
AC1
X
671 684Right-handed alpha
Helix 20
AC2
X
703 727Right-handed alpha
Helix 21
AC3
X
757 778Right-handed alpha
Helix 22
AC4
X
779 784Right-handed alpha
Helix 23
AC5
X
803 816Right-handed alpha
Helix 24
AC6
X
830 852Right-handed alpha
Helix 25
AC7
X
881 893Right-handed alpha
Helix 26
AC8
X
896 905Right-handed alpha
Helix 27
AC9
X
906 911Right-handed 310
Helix 28
AD1
X
941 945Right-handed 310
Helix 29
AD2
X
970 977Right-handed alpha
Helix 30
AD3
X
1025 1053Right-handed alpha
Helix 31
AD4
X
1094 1130Right-handed alpha
Helix 32
AD5
X
1141 1158Right-handed alpha
Helix 33
AD6
X
1169 1181Right-handed alpha
Helix 34
AD7
X
1188 1201Right-handed alpha
Helix 35
AD8
X
1266 1271Right-handed alpha
Helix 36
AD9
X
1274 1278Right-handed 310
Helix 37
AE1
X
1292 1318Right-handed alpha
Helix 38
AE2
X
1342 1360Right-handed alpha
Helix 39
AE3
X
1368 1378Right-handed alpha
Helix 40
AE4
X
1398 1427Right-handed alpha
Helix 41
AE5
X
1443 1447Right-handed 310
Helix 42
AE6
X
1448 1477Right-handed alpha
Helix 43
AE7
X
1499 1530Right-handed alpha
Helix 44
AE8
X
1534 1543Right-handed alpha
Helix 45
AE9
X
1550 1555Right-handed alpha
Helix 46
AF1
X
1558 1565Right-handed alpha
Helix 47
AF2
X
1567 1569Right-handed 310
Helix 48
AF3
X
1570 1575Right-handed alpha
Helix 49
AF4
X
1635 1643Right-handed alpha
Helix 50
AF5
X
1650 1674Right-handed alpha
Helix 51
AF6
X
1679 1703Right-handed alpha
Helix 52
AF7
X
1712 1725Right-handed alpha
Helix 53
AF8
X
1730 1744Right-handed alpha
Helix 54
AF9
X
1755 1776Right-handed alpha
Helix 55
AG1
X
1793 1822Right-handed alpha
Helix 56
AG2
X
1827 1832Right-handed alpha
Helix 57
AG3
X
1837 1867Right-handed alpha
Helix 58
AG4
X
1887 1894Right-handed alpha
Helix 59
AG5
X
1942 1948Right-handed alpha
Helix 60
AG6
X
1951 1984Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7B54. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
569 570first strand
Strand 2
X
665 666anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
923 925first strand
Strand 2
X
946 948anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il