Analysis of interatomic Contacts of Structural Units in PDB entry:
7B5L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7B5L entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 14 chains in PDB entry 7B5L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 17	ALA 776
H	ASP 98	TYR 554
T	VAL 95	GLN 419
K	GLN 5	LEU 73
S	PRO 2	CYS 160
U	MET 1	GLY 75
N	MET 1	GLY 76
R	ARG 21	HIS 108
D	MET 1	ARG 151
L	GLY 13	TYR 159
L	HIS 161	LEU 298
Y	VAL 175	LEU 432
P	SER 27	GLN 186
P	PRO 188	LYS 190

There are114 helices in PDB entry 7B5L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	18	32	Right-handed alpha
Helix 2	AA2	C	38	53	Right-handed alpha
Helix 3	AA3	C	85	106	Right-handed alpha
Helix 4	AA4	C	114	137	Right-handed alpha
Helix 5	AA5	C	139	144	Right-handed alpha
Helix 6	AA6	C	158	172	Right-handed alpha
Helix 7	AA7	C	176	188	Right-handed alpha
Helix 8	AA8	C	189	191	Right-handed 310
Helix 9	AA9	C	198	211	Right-handed alpha
Helix 10	AB1	C	225	232	Right-handed alpha
Helix 11	AB2	C	232	253	Right-handed alpha
Helix 12	AB3	C	256	275	Right-handed alpha
Helix 13	AB4	C	283	296	Right-handed alpha
Helix 14	AB5	C	299	313	Right-handed alpha
Helix 15	AB6	C	317	329	Right-handed alpha
Helix 16	AB7	C	332	354	Right-handed alpha
Helix 17	AB8	C	355	361	Right-handed 310
Helix 18	AB9	C	362	384	Right-handed alpha
Helix 19	AC1	C	388	405	Right-handed alpha
Helix 20	AC2	C	406	412	Right-handed alpha
Helix 21	AC3	C	417	431	Right-handed alpha
Helix 22	AC4	C	438	456	Right-handed alpha
Helix 23	AC5	C	460	476	Right-handed alpha
Helix 24	AC6	C	481	497	Right-handed alpha
Helix 25	AC7	C	501	525	Right-handed alpha
Helix 26	AC8	C	526	528	Right-handed 310
Helix 27	AC9	C	559	574	Right-handed alpha
Helix 28	AD1	C	583	586	Right-handed 310
Helix 29	AD2	C	604	614	Right-handed alpha
Helix 30	AD3	C	622	630	Right-handed alpha
Helix 31	AD4	C	632	646	Right-handed alpha
Helix 32	AD5	C	706	722	Right-handed alpha
Helix 33	AD6	C	727	739	Right-handed alpha
Helix 34	AD7	C	745	759	Right-handed alpha
Helix 35	AD8	H	105	125	Right-handed alpha
Helix 36	AD9	H	127	138	Right-handed alpha
Helix 37	AE1	H	141	151	Right-handed alpha
Helix 38	AE2	H	154	160	Right-handed alpha
Helix 39	AE3	H	194	196	Right-handed 310
Helix 40	AE4	H	209	223	Right-handed alpha
Helix 41	AE5	H	241	249	Right-handed alpha
Helix 42	AE6	H	252	270	Right-handed alpha
Helix 43	AE7	H	316	326	Right-handed alpha
Helix 44	AE8	H	332	341	Right-handed alpha
Helix 45	AE9	H	408	430	Right-handed alpha
Helix 46	AF1	H	430	448	Right-handed alpha
Helix 47	AF2	H	452	481	Right-handed alpha
Helix 48	AF3	H	485	513	Right-handed alpha
Helix 49	AF4	H	517	550	Right-handed alpha
Helix 50	AF5	T	96	100	Right-handed 310
Helix 51	AF6	T	101	110	Right-handed alpha
Helix 52	AF7	T	113	121	Right-handed alpha
Helix 53	AF8	T	124	131	Right-handed alpha
Helix 54	AF9	T	148	158	Right-handed alpha
Helix 55	AG1	T	194	203	Right-handed alpha
Helix 56	AG2	T	219	227	Right-handed alpha
Helix 57	AG3	T	244	255	Right-handed alpha
Helix 58	AG4	T	270	281	Right-handed alpha
Helix 59	AG5	T	298	309	Right-handed alpha
Helix 60	AG6	T	324	334	Right-handed alpha
Helix 61	AG7	T	351	357	Right-handed alpha
Helix 62	AG8	T	374	383	Right-handed alpha
Helix 63	AG9	T	408	412	Right-handed 310
Helix 64	AH1	K	25	30	Right-handed alpha
Helix 65	AH2	K	39	47	Right-handed alpha
Helix 66	AH3	S	18	22	Right-handed alpha
Helix 67	AH4	S	24	32	Right-handed alpha
Helix 68	AH5	S	45	59	Right-handed alpha
Helix 69	AH6	S	86	93	Right-handed alpha
Helix 70	AH7	S	96	111	Right-handed alpha
Helix 71	AH8	S	112	128	Right-handed alpha
Helix 72	AH9	S	131	140	Right-handed alpha
Helix 73	AI1	S	149	156	Right-handed alpha
Helix 74	AI2	U	22	34	Right-handed alpha
Helix 75	AI3	U	55	60	Right-handed 310
Helix 76	AI4	N	22	35	Right-handed alpha
Helix 77	AI5	R	81	91	Right-handed alpha
Helix 78	AI6	D	2	18	Right-handed alpha
Helix 79	AI7	D	100	114	Right-handed alpha
Helix 80	AI8	D	122	132	Right-handed alpha
Helix 81	AI9	D	132	146	Right-handed alpha
Helix 82	AJ1	L	45	56	Right-handed alpha
Helix 83	AJ2	L	87	94	Right-handed alpha
Helix 84	AJ3	L	100	121	Right-handed alpha
Helix 85	AJ4	L	145	149	Right-handed 310
Helix 86	AJ5	L	165	169	Right-handed 310
Helix 87	AJ6	L	170	175	Right-handed alpha
Helix 88	AJ7	L	183	199	Right-handed alpha
Helix 89	AJ8	L	207	220	Right-handed alpha
Helix 90	AJ9	L	247	252	Right-handed alpha
Helix 91	AK1	L	256	265	Right-handed alpha
Helix 92	AK2	L	276	282	Right-handed alpha
Helix 93	AK3	L	283	288	Right-handed alpha
Helix 94	AK4	Y	178	193	Right-handed alpha
Helix 95	AK5	Y	198	203	Right-handed alpha
Helix 96	AK6	Y	207	225	Right-handed alpha
Helix 97	AK7	Y	228	244	Right-handed alpha
Helix 98	AK8	Y	249	251	Right-handed 310
Helix 99	AK9	Y	252	269	Right-handed alpha
Helix 100	AL1	Y	274	282	Right-handed alpha
Helix 101	AL2	Y	287	303	Right-handed alpha
Helix 102	AL3	Y	310	320	Right-handed alpha
Helix 103	AL4	Y	326	343	Right-handed alpha
Helix 104	AL5	Y	346	350	Right-handed 310
Helix 105	AL6	Y	351	369	Right-handed alpha
Helix 106	AL7	Y	373	381	Right-handed alpha
Helix 107	AL8	Y	383	401	Right-handed alpha
Helix 108	AL9	Y	402	404	Right-handed 310
Helix 109	AM1	Y	407	413	Right-handed alpha
Helix 110	AM2	Y	414	419	Right-handed 310
Helix 111	AM3	Y	420	424	Right-handed 310
Helix 112	AM4	P	38	50	Right-handed alpha
Helix 113	AM5	P	53	61	Right-handed alpha
Helix 114	AM6	P	85	90	Right-handed 310

There are 24 sheets in PDB entry 7B5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	540	first strand
Strand 2	R	26	34	parallel
Strand 3	C	578	581	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	540	first strand
Strand 2	R	26	34	parallel
Strand 3	C	588	589	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	602	first strand
Strand 2	C	682	683	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	621	first strand
Strand 2	C	668	671	anti-parallel
Strand 3	C	649	650	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	725	726	first strand
Strand 2	C	771	774	anti-parallel
Strand 3	C	762	764	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	104	first strand
Strand 2	H	284	287	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	198	199	first strand
Strand 2	H	207	208	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	294	296	first strand
Strand 2	H	302	304	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	342	343	first strand
Strand 2	H	350	351	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	359	361	first strand
Strand 2	H	370	372	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	162	164	first strand
Strand 2	T	185	187	parallel
Strand 3	T	210	211	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	260	262	first strand
Strand 2	T	287	289	parallel
Strand 3	T	314	316	parallel
Strand 4	T	339	341	parallel
Strand 5	T	364	365	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	8	first strand
Strand 2	K	17	23	anti-parallel
Strand 3	K	12	13	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	8	first strand
Strand 2	K	17	23	anti-parallel
Strand 3	K	66	72	anti-parallel
Strand 4	K	55	59	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	17	first strand
Strand 2	S	3	7	anti-parallel
Strand 3	S	39	40	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	16	first strand
Strand 2	U	2	7	anti-parallel
Strand 3	U	66	71	parallel
Strand 4	U	41	45	anti-parallel
Strand 5	U	48	49	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	2	6	first strand
Strand 2	N	12	16	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	48	49	first strand
Strand 2	N	41	45	anti-parallel
Strand 3	N	68	71	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	78	80	first strand
Strand 2	R	70	73	anti-parallel
Strand 3	R	103	105	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	27	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	51	56	anti-parallel
Strand 4	D	67	69	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	36	first strand
Strand 2	L	75	80	anti-parallel
Strand 3	L	66	71	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	85	86	first strand
Strand 2	L	133	135	anti-parallel
Strand 3	L	141	143	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	124	first strand
Strand 2	L	150	151	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	62	63	first strand
Strand 2	P	68	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7B5L

Analysis of interatomic Contacts of Structural Units in PDB entry:
7B5L