Analysis of interatomic Contacts of Structural Units in PDB entry:
7B5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7B5R entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 7B5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 17	LEU 340
T	VAL 95	GLN 419
K	GLN 5	LEU 73
S	PRO 2	CYS 160
L	GLY 13	TYR 159
L	HIS 161	LEU 298
Y	VAL 175	LEU 432
P	SER 27	GLN 186
P	PRO 188	LYS 190

There are 71 helices in PDB entry 7B5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	18	32	Right-handed alpha
Helix 2	AA2	C	38	53	Right-handed alpha
Helix 3	AA3	C	85	106	Right-handed alpha
Helix 4	AA4	C	114	137	Right-handed alpha
Helix 5	AA5	C	139	144	Right-handed alpha
Helix 6	AA6	C	158	172	Right-handed alpha
Helix 7	AA7	C	176	188	Right-handed alpha
Helix 8	AA8	C	189	191	Right-handed 310
Helix 9	AA9	C	198	211	Right-handed alpha
Helix 10	AB1	C	225	232	Right-handed alpha
Helix 11	AB2	C	232	253	Right-handed alpha
Helix 12	AB3	C	256	278	Right-handed alpha
Helix 13	AB4	C	283	296	Right-handed alpha
Helix 14	AB5	C	299	313	Right-handed alpha
Helix 15	AB6	C	316	329	Right-handed alpha
Helix 16	AB7	C	332	340	Right-handed alpha
Helix 17	AB8	T	96	100	Right-handed 310
Helix 18	AB9	T	101	110	Right-handed alpha
Helix 19	AC1	T	113	121	Right-handed alpha
Helix 20	AC2	T	124	131	Right-handed alpha
Helix 21	AC3	T	148	158	Right-handed alpha
Helix 22	AC4	T	194	203	Right-handed alpha
Helix 23	AC5	T	219	227	Right-handed alpha
Helix 24	AC6	T	244	255	Right-handed alpha
Helix 25	AC7	T	270	281	Right-handed alpha
Helix 26	AC8	T	298	309	Right-handed alpha
Helix 27	AC9	T	324	334	Right-handed alpha
Helix 28	AD1	T	350	359	Right-handed 310
Helix 29	AD2	T	374	383	Right-handed alpha
Helix 30	AD3	K	25	30	Right-handed alpha
Helix 31	AD4	K	39	47	Right-handed alpha
Helix 32	AD5	S	18	22	Right-handed alpha
Helix 33	AD6	S	24	33	Right-handed alpha
Helix 34	AD7	S	45	59	Right-handed alpha
Helix 35	AD8	S	86	93	Right-handed alpha
Helix 36	AD9	S	96	111	Right-handed alpha
Helix 37	AE1	S	112	128	Right-handed alpha
Helix 38	AE2	S	131	139	Right-handed alpha
Helix 39	AE3	S	149	156	Right-handed alpha
Helix 40	AE4	L	45	56	Right-handed alpha
Helix 41	AE5	L	87	94	Right-handed alpha
Helix 42	AE6	L	100	121	Right-handed alpha
Helix 43	AE7	L	129	132	Right-handed 310
Helix 44	AE8	L	145	149	Right-handed 310
Helix 45	AE9	L	170	175	Right-handed alpha
Helix 46	AF1	L	183	199	Right-handed alpha
Helix 47	AF2	L	207	220	Right-handed alpha
Helix 48	AF3	L	247	252	Right-handed alpha
Helix 49	AF4	L	256	265	Right-handed alpha
Helix 50	AF5	L	276	281	Right-handed alpha
Helix 51	AF6	L	283	288	Right-handed alpha
Helix 52	AF7	Y	178	190	Right-handed alpha
Helix 53	AF8	Y	198	203	Right-handed alpha
Helix 54	AF9	Y	207	225	Right-handed alpha
Helix 55	AG1	Y	228	244	Right-handed alpha
Helix 56	AG2	Y	249	251	Right-handed 310
Helix 57	AG3	Y	252	269	Right-handed alpha
Helix 58	AG4	Y	274	282	Right-handed alpha
Helix 59	AG5	Y	287	303	Right-handed alpha
Helix 60	AG6	Y	310	320	Right-handed alpha
Helix 61	AG7	Y	326	343	Right-handed alpha
Helix 62	AG8	Y	351	369	Right-handed alpha
Helix 63	AG9	Y	373	381	Right-handed alpha
Helix 64	AH1	Y	387	401	Right-handed alpha
Helix 65	AH2	Y	402	404	Right-handed 310
Helix 66	AH3	Y	407	413	Right-handed alpha
Helix 67	AH4	Y	415	419	Right-handed 310
Helix 68	AH5	Y	420	424	Right-handed 310
Helix 69	AH6	P	38	50	Right-handed alpha
Helix 70	AH7	P	54	61	Right-handed alpha
Helix 71	AH8	P	85	90	Right-handed 310

There are 8 sheets in PDB entry 7B5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	139	141	first strand
Strand 2	T	162	164	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	260	262	first strand
Strand 2	T	287	289	parallel
Strand 3	T	314	316	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	339	341	first strand
Strand 2	T	364	366	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	23	first strand
Strand 2	K	66	72	anti-parallel
Strand 3	K	55	56	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	17	first strand
Strand 2	S	3	7	anti-parallel
Strand 3	S	39	40	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	36	first strand
Strand 2	L	75	80	anti-parallel
Strand 3	L	69	71	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	85	86	first strand
Strand 2	L	134	135	anti-parallel
Strand 3	L	141	142	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	124	first strand
Strand 2	L	150	151	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7B5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
7B5R