Analysis of interatomic Contacts of Structural Units in PDB entry:
7B5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7B5S entry

There are 3 chains in PDB entry 7B5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LEU 17VAL 686
H
 ASP 98TYR 554
R
 ARG 21HIS 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7B5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
20 32Right-handed alpha
Helix 2
AA2
C
38 53Right-handed alpha
Helix 3
AA3
C
85 105Right-handed alpha
Helix 4
AA4
C
114 137Right-handed alpha
Helix 5
AA5
C
139 144Right-handed alpha
Helix 6
AA6
C
158 172Right-handed alpha
Helix 7
AA7
C
174 188Right-handed alpha
Helix 8
AA8
C
189 191Right-handed 310
Helix 9
AA9
C
198 211Right-handed alpha
Helix 10
AB1
C
225 232Right-handed alpha
Helix 11
AB2
C
232 253Right-handed alpha
Helix 12
AB3
C
256 275Right-handed alpha
Helix 13
AB4
C
283 295Right-handed alpha
Helix 14
AB5
C
299 313Right-handed alpha
Helix 15
AB6
C
317 328Right-handed alpha
Helix 16
AB7
C
333 354Right-handed alpha
Helix 17
AB8
C
355 361Right-handed 310
Helix 18
AB9
C
362 384Right-handed alpha
Helix 19
AC1
C
388 405Right-handed alpha
Helix 20
AC2
C
406 412Right-handed alpha
Helix 21
AC3
C
417 431Right-handed alpha
Helix 22
AC4
C
438 455Right-handed alpha
Helix 23
AC5
C
458 476Right-handed alpha
Helix 24
AC6
C
481 497Right-handed alpha
Helix 25
AC7
C
501 525Right-handed alpha
Helix 26
AC8
C
526 528Right-handed 310
Helix 27
AC9
C
559 574Right-handed alpha
Helix 28
AD1
C
604 613Right-handed alpha
Helix 29
AD2
C
622 630Right-handed alpha
Helix 30
AD3
C
632 646Right-handed alpha
Helix 31
AD4
H
316 326Right-handed alpha
Helix 32
AD5
H
408 430Right-handed alpha
Helix 33
AD6
H
430 448Right-handed alpha
Helix 34
AD7
H
452 481Right-handed alpha
Helix 35
AD8
H
485 513Right-handed alpha
Helix 36
AD9
H
517 550Right-handed alpha
Helix 37
AE1
R
53 58Right-handed alpha
Helix 38
AE2
R
81 91Right-handed alpha
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There are 6 sheets in PDB entry 7B5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
534 540first strand
Strand 2
R
26 32parallel
Strand 3
C
580 589anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
601 602first strand
Strand 2
C
682 683parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
619 621first strand
Strand 2
C
668 671anti-parallel
Strand 3
C
649 650anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
101 104first strand
Strand 2
H
284 287anti-parallel
Strand 3
H
273 275anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
294 296first strand
Strand 2
H
302 304anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
70 72first strand
Strand 2
R
78 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il