Analysis of interatomic Contacts of Structural Units in PDB entry:
7B8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7B8B entry

There are 2 chains in PDB entry 7B8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 38CYS 406
B
 THR 40CYS 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7B8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 50Right-handed 310
Helix 2
AA2
A
59 73Right-handed alpha
Helix 3
AA3
A
115 119Right-handed 310
Helix 4
AA4
A
148 154Right-handed alpha
Helix 5
AA5
A
271 274Right-handed 310
Helix 6
AA6
B
47 50Right-handed 310
Helix 7
AA7
B
59 73Right-handed alpha
Helix 8
AA8
B
115 119Right-handed 310
Helix 9
AA9
B
148 154Right-handed alpha
Helix 10
AB1
B
271 274Right-handed 310
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There are 6 sheets in PDB entry 7B8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
75 81parallel
Strand 3
A
100 106parallel
Strand 4
A
135 137parallel
Strand 5
A
177 182parallel
Strand 6
A
200 205parallel
Strand 7
A
227 237parallel
Strand 8
A
208 210parallel
Strand 9
A
185 187parallel
Strand 10
A
143 145parallel
Strand 11
A
109 112parallel
Strand 12
A
86 89parallel
Strand 13
A
54 58parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
75 81parallel
Strand 3
A
100 106parallel
Strand 4
A
135 137parallel
Strand 5
A
177 182parallel
Strand 6
A
200 205parallel
Strand 7
A
227 237parallel
Strand 8
A
250 259parallel
Strand 9
A
276 290parallel
Strand 10
A
305 321parallel
Strand 11
A
345 358parallel
Strand 12
A
374 385parallel
Strand 13
A
394 403parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
124 129parallel
Strand 3
A
169 174parallel
Strand 4
A
194 197parallel
Strand 5
A
221 224parallel
Strand 6
A
243 245parallel
Strand 7
A
265 270parallel
Strand 8
A
296 301parallel
Strand 9
A
325 331parallel
Strand 10
A
362 367parallel
Strand 11
A
388 392parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
75 81parallel
Strand 3
B
100 106parallel
Strand 4
B
135 137parallel
Strand 5
B
177 182parallel
Strand 6
B
200 205parallel
Strand 7
B
227 237parallel
Strand 8
B
208 210parallel
Strand 9
B
185 187parallel
Strand 10
B
143 145parallel
Strand 11
B
109 112parallel
Strand 12
B
86 89parallel
Strand 13
B
54 58parallel
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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
75 81parallel
Strand 3
B
100 106parallel
Strand 4
B
135 137parallel
Strand 5
B
177 182parallel
Strand 6
B
200 205parallel
Strand 7
B
227 237parallel
Strand 8
B
250 259parallel
Strand 9
B
276 290parallel
Strand 10
B
305 321parallel
Strand 11
B
345 358parallel
Strand 12
B
374 385parallel
Strand 13
B
394 397parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 95first strand
Strand 2
B
124 129parallel
Strand 3
B
169 174parallel
Strand 4
B
194 197parallel
Strand 5
B
221 224parallel
Strand 6
B
243 245parallel
Strand 7
B
265 270parallel
Strand 8
B
296 301parallel
Strand 9
B
325 331parallel
Strand 10
B
362 367parallel
Strand 11
B
388 392parallel
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